MXO03052.5prime Sequence
761 bp (760 high quality bases) assembled on 2007-05-24
> MXO03052.5prime
CAGTCGACATGTCACAGATGCTGCAGCTGGATGCCTTGGTCATGGCCATG
GCCTGTCTATCCACCACACAAACGGATCTGGGCGGAGGACTGTTGGTTCC
GCCCTCCTTGGGAAATGCGAGTTCCAGCAGCTGTCCAGTTTCGGCTTTAA
GTGGTCTTACCACTCGAATGCAATCGCTGAACAACGAAATAGCTAGTGTC
AAGGAGCAGATAGGCAGTCTCCAGGAGCAGTTGGTGGATCTGCGAAGAGC
GGGAAGTGCACCGGTGGTGGGACTCGCTTCGCCCAATGCACTGGCATCTC
GATTCCTAGACATTGAGCCGCAACTCCTGGCCAACGGTGGTGCAGCGGCC
GTTCCAATCACTCCGGCAAACTGCCTGAAACAGCAGCACGGTGTGGTGCG
AATCAGACCCCGCTCGAACGTGGAACCGTTCTTTGTTTTTTGCGATCAGA
AGGTCAGAAACGGTGGTTGGACAATGGTAGTTAATCGTTATGATGGCAGT
GAGGATTTCAATCGAAAGTGGGCGGATTACAAGATCGGTTTCGGGCCACT
AACCACCGAGTTCTTCATCGGATTGGATAAATTGCATCAGATTACGAGCA
GTGACAACTATGAGCTTTTGGTTCAGCTGCAGAATCGAAAGCAGGAGCTG
AGATATGCCCTATATGATCACTTTAGCATCGGCAGTGAATCGGAACAGTA
TCGTCTGAATGTCTTGGGGGATTATCACGGCGATGCTGCCGATGCATTGC
GTGACCACACG
MXO03052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1889-PA | 999 | CG1889-RA | 1..753 | 9..761 | 3765 | 100 | Plus |
| CG1889-PB | 726 | CG1889-RB | 24..480 | 305..761 | 2285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1889-RC | 1223 | CG1889-RC | 110..862 | 9..761 | 3765 | 100 | Plus |
| CG1889-RA | 1468 | CG1889-RA | 110..862 | 9..761 | 3765 | 100 | Plus |
| CG1889-RE | 1227 | CG1889-RE | 110..866 | 9..761 | 3715 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9965837..9966293 | 305..761 | 2285 | 100 | Plus |
| X | 23542271 | X | 9965585..9965770 | 119..304 | 930 | 100 | Plus |
| X | 23542271 | X | 9965350..9965460 | 9..119 | 555 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 139..189 | 475..425 | 111 | 68.6 | Minus |
MXO03052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:25:35 Download gff for
MXO03052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-PA | 1..753 | 9..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:23 Download gff for
MXO03052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RA | 110..862 | 9..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:29 Download gff for
MXO03052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1889-RA | 110..862 | 9..761 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:29 Download gff for
MXO03052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9965350..9965460 | 9..119 | 100 | -> | Plus |
| X | 9965586..9965770 | 120..304 | 100 | -> | Plus |
| X | 9965837..9966293 | 305..761 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:23 Download gff for
MXO03052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9859619..9859803 | 120..304 | 100 | -> | Plus |
| arm_X | 9859383..9859493 | 9..119 | 100 | -> | Plus |
| arm_X | 9859870..9860326 | 305..761 | 100 | | Plus |
