MXO03053.5prime Sequence
818 bp (634 high quality bases) assembled on 2007-05-24
> MXO03053.5prime
CAGTCGACATGGTATTCCAGTTGCCAACAACAACCGCCGCCCCGACCGGA
GGCGCAACATCGTCGTTTTCCTTCGGCCTCAGCACAGGAACACCAGCCGC
AGCACCAGCTTCAGGAGCAGCAACCACGGCTCCCGCCACAAAAACCACAT
TCTCTTTCGGAACACCGGCACCTACTGCTGGTATCGGTGGCGGAGATGCA
GACAACAGCAAGGCGCAGGCTCCACCAGCCTTTGGATTTGGCCTGGGATC
CGGGACTGCTTCAGCTCCCCTCACGCTGGGCACTCAAGCCGCCGCAAATC
CAGCGTCCACCACTTCTGCGACCGCGACTGGAACCTCTGCTGCTCCTCCC
GCCTTCGGAGGCTTTACGGCTCAACCAGCGGCATCTGTGGTGCCAACTAT
AGCAACCAGTGCACCCAACACCGCAGCTACCACAACTGGATTGCTGGGCG
GGTCTGGATTGGGAGCTCCCAAGACCACGGCCGCTGCGTCCACAACTCTG
ACTGCAGCTCCGTCGGCCATAGCCTCCACGCAGGGAGCTGCACCGGCCCC
AACTTTAAGTACTGGTGGTGCTTTTGCCAATCTCACTACCGAAACCAAGA
CCACAGACTCATCGGCCGTTTCCACGGCATCCCAATTGTACCTACCACCA
ACTTGAGGAGCATATCAACAAGAGGACTCTCGAGTTCGAGGAACAGGAAA
AGGTAATCACCGAACAGGCCACTCAGATCAACGCATGAGACAAACTGCTC
ATCAGCAACAACGGGAAGATCGTCGAGCTCAACGATGCCGAGAAAAAAGT
GAAGACCGATCAGCAAGT
MXO03053.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6251-PA | 1185 | Nup62-RA | 1..631 | 9..639 | 3155 | 100 | Plus |
| CG6251-PA | 1185 | Nup62-RA | 632..809 | 641..818 | 765 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup62-RB | 1345 | CG6251-RB | 97..906 | 8..818 | 3955 | 99.3 | Plus |
| Nup62-RA | 1452 | CG6251-RA | 204..1013 | 8..818 | 3955 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16344580..16345389 | 8..818 | 3930 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:42:33 has no hits.
MXO03053.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:25:41 Download gff for
MXO03053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6251-PA | 1..809 | 9..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:28 Download gff for
MXO03053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 204..1013 | 8..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:41 Download gff for
MXO03053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup62-RA | 204..1013 | 8..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:41 Download gff for
MXO03053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16344580..16345389 | 8..818 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:28 Download gff for
MXO03053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12232085..12232894 | 8..818 | 99 | | Plus |
