MXO03054.5prime Sequence
856 bp (824 high quality bases) assembled on 2007-05-24
> MXO03054.5prime
CAGTCGACATGAGATCCAGCAAAGTTCGTGGGGGCAACGCCAGTCGATTG
GCTGACGCGGAGGGACAGTGGGGAAAGGGATGCCTGGGTTCCCAGCACTC
AATTATCAAGAATCACGGGCGTGGCCTTTCATCCCAAACTCCCACGCAAT
TTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTGTACTCGCAG
CCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAACTCGCTGCT
CCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAAC
AGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAGCAGCAACTC
CTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATCCGGACCAGGAGTGGG
CGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATGCGGACCAGATGCACG
CCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAGTTCGAGCAGCAGCAG
CAGCACCTGCTGCAGAAGCTCTACCACTACTATCCCGATGTATCCGGCGG
CCTAACATCACCGGCTCATCAGATTCAACCCCAAACCCCCCAGATAGCTG
CTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCACAGAACGCA
GCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAATGGCCTGCA
GCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTCCAGTAAGAG
GAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCAGCGCCTTTG
CGCTCCACAGTCTGGGAGGGGGAGCAAGTGGAGACTTCTACTCCACGCAA
CAGCAC
MXO03054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:25:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32548-PC | 1065 | CG32548-RC | 1..799 | 9..807 | 3995 | 100 | Plus |
| CG32548-PB | 1158 | CG32548-RB | 220..892 | 135..807 | 3365 | 100 | Plus |
| CG32548-PC | 1065 | CG32548-RC | 800..849 | 807..856 | 250 | 100 | Plus |
| CG32548-PB | 1158 | CG32548-RB | 893..942 | 807..856 | 250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32548-RC | 1382 | CG32548-RC | 173..1022 | 8..856 | 4225 | 99.9 | Plus |
| CG32548-RB | 1475 | CG32548-RB | 393..1115 | 135..856 | 3590 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18436079..18436801 | 856..135 | 3565 | 99.9 | Minus |
| X | 23542271 | X | 18437002..18437128 | 134..8 | 635 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..7102 | 245..521 | 298 | 59.5 | Plus |
MXO03054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:25:47 Download gff for
MXO03054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-PC | 1..849 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:00 Download gff for
MXO03054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RC | 165..1022 | 1..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:30 Download gff for
MXO03054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32548-RC | 165..1022 | 1..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:30 Download gff for
MXO03054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18436079..18436801 | 135..856 | 99 | <- | Minus |
| X | 18437002..18437136 | 1..134 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:00 Download gff for
MXO03054.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18330112..18330834 | 135..856 | 99 | <- | Minus |
| arm_X | 18331035..18331169 | 1..134 | 97 | | Minus |
