MXO03055.5prime Sequence
762 bp (664 high quality bases) assembled on 2007-05-24
> MXO03055.5prime
CAGTCGACATGTCCGGAAAAGATAGGCTACCGATTTTCCCGTCCCGTGGT
GCCCAGATGTTGATGAAGGCCCGTCTGGCTGGAGCCCAGAAAGGTCACGG
TCTGCTCAAGAAGAAGGCGGATGCCCTGCAGATGCGATTCCGTTTGATTC
TGGGCAAGATCATCGAGACCAAGACCCTGATGGGTGATGTTATGAAAGAG
GCAGCCTTCTCGCTGGCGGAGGCCAAATTCACGTCTGGCGACATCAACCA
AGTGGTGCTGCAAAACGTGACCAAGGCCCAGATCAAGATCCGCACCAAGA
AGGACAACGTGGCTGGTGTCACTCTGCCCGTTTTCGAGTCCTACCAGGAC
GGATCCGACACCTACGAACTGGCCGGTCTAGCCCGTGGTGGTCAGCAGCT
GGCCAAGCTGAAGAAGAACTACCAAAGCGCCGTTAAACTGCTCGTGGAGC
TGGCCTCGCTGCAGACCTCATTCGTCACCCTGGACGAGGTGATCAAGATC
ACCAACCGTCGTGTGAACGCCATTGAGCATGTGATCATCCCCCGAATCGA
TAGGACTTTGGCCTACATCATCTCGGAGCTGGACGAGCTCGAGCGTGAGG
AGTTCTACCGACTGAAGAAGATCCAGGACAAGAAGCGCGAGGCACGCATC
AAGGCCGACGCCAAGAAGGCGGAGTTGCTGCAGCAGGGCATCGATGTGCG
CCAGCAGGCCAATATCCTGGATGAGGGCGATGACGACGTGCTGTTCGCAA
GCTTTCTAGACC
MXO03055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8186-PA | 741 | Vha36-RA | 1..738 | 9..746 | 3690 | 100 | Plus |
| CG8310-PA | 750 | CG8310-RA | 247..305 | 255..313 | 270 | 98.3 | Plus |
| CG8310-PA | 750 | CG8310-RA | 91..203 | 99..211 | 265 | 89.3 | Plus |
| CG8310-PA | 750 | CG8310-RA | 376..425 | 384..433 | 200 | 96 | Plus |
| CG8310-PA | 750 | CG8310-RA | 583..635 | 591..643 | 190 | 94.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha36-1-RA | 1064 | CG8186-RA | 103..840 | 9..746 | 3690 | 100 | Plus |
| Vha36-3-RC | 1294 | CG8310-RC | 374..986 | 36..648 | 1430 | 82.2 | Plus |
| Vha36-3-RB | 1138 | CG8310-RB | 218..830 | 36..648 | 1430 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15541537..15542274 | 9..746 | 3690 | 100 | Plus |
| X | 23542271 | X | 2579579..2579942 | 529..166 | 860 | 82.4 | Minus |
| X | 23542271 | X | 2579996..2580112 | 167..51 | 285 | 82.9 | Minus |
| X | 23542271 | X | 2579399..2579516 | 648..531 | 275 | 82.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:58 has no hits.
MXO03055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:25:52 Download gff for
MXO03055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8186-PA | 1..741 | 9..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:13 Download gff for
MXO03055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha36-1-RA | 96..849 | 1..758 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:17 Download gff for
MXO03055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha36-1-RA | 96..849 | 1..758 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:17 Download gff for
MXO03055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15541530..15542283 | 1..758 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:13 Download gff for
MXO03055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11429035..11429788 | 1..758 | 98 | | Plus |
