MXO03056.5prime Sequence
860 bp (754 high quality bases) assembled on 2007-05-24
> MXO03056.5prime
CAGTCGACATGTATCCAATAACGTTTATCTATCGTGTCAACAATGATAAG
GATCCCTACCGGAAGAGAGGTTCAGAGATCGGCGACATTCAACTAAAGGC
CACCTCTGAAACTTTTTCTCCAAAAATGGTTGTGGATTTCGTAGCCGGAC
TCCTGGGCGGAGCTGCTGGTGTTCTTGTCGGCCATCCCTTCGATACCGTG
AAGGTCCACCTGCAAACCGATGATCCTCGCAATCCCAAGTACAAAGGCAC
ATTCCACTGCTTCCGGACGATAGTGCAAAGAGACAAATTCATAGGATTAT
ATCGTGGTATCAGCAGTCCCATGGGAGGAATCGGATTGGTGAACGCCATC
GTTTTCGGGGTCTACGGAAACGTGCAACGCTTGTCCTATGACCCCAATTC
GCTGACGTCACACTTCTTCGCTGGCTCCATCGCTGGTGTCGCCCAGGGTT
TCGTGTGTGCGCCCATGGAGTTGGCCAAAACGCGACTCCAATTGTCCACG
CAGGTTGATAGCGGCATCAAGTTCACTGGACCCATTCACTGCCTCAAGTA
CATAGTAAAAACGGAGGGTATCAGAGGTGCCTTCAAGGGATTAACAGCCA
CCATTCTAAGGGATATTCCAGGCTTTGCCAGCTACTTTGTGTCCTTCGAG
TACCTTATGCGTCAAGTGGAGACACCCGGCGTTGCGTACACTCTAATGGC
CGGCGGATGTGCTGGCATGTCGTCCTGGTTGGCGTGCTACCCCATCGACG
TGGTGAAGACCCACATGCAGGCCGATGCCCTGGGCGCGAATGCCAAATAC
AATGGCTTCATCGACTGTGCCATGAAGGGCTTTAGGAACGAGGGACCGCA
GTACTTCTTT
MXO03056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:25:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4995-PA | 1200 | CG4995-RA | 1..852 | 9..860 | 4210 | 99.7 | Plus |
| CG4995-PB | 1200 | CG4995-RB | 1..852 | 9..860 | 4210 | 99.7 | Plus |
| CG4995-PC | 1083 | CG4995-RC | 1..735 | 126..860 | 3650 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4995-RB | 1431 | CG4995-RB | 207..1058 | 9..860 | 4230 | 99.8 | Plus |
| CG4995-RA | 1417 | CG4995-RA | 193..1044 | 9..860 | 4230 | 99.8 | Plus |
| CG4995-RD | 1246 | CG4995-RD | 64..873 | 51..860 | 4035 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10323847..10324310 | 159..622 | 2305 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10324375..10324617 | 618..860 | 1215 | 100 | Plus |
| 2L | 23513712 | 2L | 10323669..10323780 | 49..160 | 560 | 100 | Plus |
| 2L | 23513712 | 2L | 10322793..10322835 | 9..51 | 200 | 97.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:24:46 has no hits.
MXO03056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:25:56 Download gff for
MXO03056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-PB | 1..852 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:16 Download gff for
MXO03056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RA | 186..1044 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:46 Download gff for
MXO03056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4995-RA | 186..1044 | 1..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:46 Download gff for
MXO03056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10323671..10323779 | 51..159 | 100 | -> | Plus |
| 2L | 10323848..10324309 | 160..621 | 99 | -> | Plus |
| 2L | 10324379..10324617 | 622..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:16 Download gff for
MXO03056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10323671..10323779 | 51..159 | 100 | -> | Plus |
| arm_2L | 10323848..10324309 | 160..621 | 99 | -> | Plus |
| arm_2L | 10324379..10324617 | 622..860 | 100 | | Plus |
