MXO03057.5prime Sequence
789 bp (755 high quality bases) assembled on 2007-05-24
> MXO03057.5prime
CAGTCGACATGGGCGGCAAGTACAAGATCGTGATGGTGCGCCACGGCGAG
TCCGAGTGGAACCAGAAGAATCAGTTCTGCGGCTGGTACGACGCCAACCT
CAGCGAAAAGGGTCAGGAGGAGGCCCTAGCCGCCGGCAAGGCCGTCAAGG
ATGCCGGCCTGGAGTTCGATGTGGCCCACACCTCGGTGCTGACCCGCGCC
CAGGTGACGCTGGCCAGCATCCTGAAGGCCAGTGGCCACAAGGAGATCCC
CATCCAGAAGACTTGGCGCCTGAACGAGCGCCACTACGGTGGACTCACTG
GCCTGAACAAGGCCGAGACCGCCGCCAAGTACGGCGAGGCCCAGGTGCAG
ATCTGGCGTCGCAGCTTCGACACCCCGCCACCACCGATGGAGCCGGGCCA
TCCGTACTACGAGAACATCGTCAAGGATCCCCGCTACGCCGAGGGTCCCA
AGCCCGAGGAGTTCCCCCAGTTCGAGTCCCTCAAGCTGACCATCGAACGC
ACACTGCCCTACTGGAACGACGTCATCATTCCCCAGATGAAGGAGGGCAA
GCGCATCCTGATCGCTGCCCACGGCAACAGCCTCCGTGGCATCGTCAAGC
ATTTAGACAACCTTTCTGAGGACGCCATCATGGCCCTAAATCTGCCCACG
GGCATTCCGTTCGTCTACGAGCTGGACGAGAACTTCAAGCCGGTGGTGTC
CATGCAGTTCCTCGGCGACGAGGAGACCGTGAAGAAGGCCATCGAGGCTG
TGGCCGCCCAGGGCAAGGCCAAGGCAAGCTTTCTAGACC
MXO03057.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1721-PA | 768 | Pglym78-RA | 1..765 | 9..773 | 3825 | 100 | Plus |
| CG1721-PB | 768 | Pglym78-RB | 1..765 | 9..773 | 3825 | 100 | Plus |
| CG1721-PC | 768 | Pglym78-RC | 1..765 | 9..773 | 3825 | 100 | Plus |
| CG17645-PA | 879 | Pglym87-RA | 265..297 | 162..194 | 165 | 100 | Plus |
| CG17645-PA | 879 | Pglym87-RA | 553..629 | 450..526 | 160 | 88.3 | Plus |
| CG17645-PA | 879 | Pglym87-RA | 367..426 | 264..323 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pglym78-RC | 1042 | CG1721-RC | 109..873 | 9..773 | 3825 | 100 | Plus |
| Pglym78-RB | 1022 | CG1721-RB | 89..853 | 9..773 | 3825 | 100 | Plus |
| Pglym78-RA | 1136 | CG1721-RA | 203..967 | 9..773 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29149008..29149506 | 111..609 | 2495 | 100 | Plus |
| 3R | 32079331 | 3R | 12231802..12232560 | 773..15 | 1215 | 77.3 | Minus |
| 3R | 32079331 | 3R | 29149569..29149732 | 610..773 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 29148450..29148554 | 9..113 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:59:23 has no hits.
MXO03057.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:02 Download gff for
MXO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1721-PC | 1..768 | 9..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:11 Download gff for
MXO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pglym78-RA | 195..972 | 1..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:08 Download gff for
MXO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pglym78-RA | 195..972 | 1..779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:08 Download gff for
MXO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29148442..29148552 | 1..111 | 96 | -> | Plus |
| 3R | 29149009..29149506 | 112..609 | 100 | -> | Plus |
| 3R | 29149569..29149737 | 610..779 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:11 Download gff for
MXO03057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24974164..24974274 | 1..111 | 96 | -> | Plus |
| arm_3R | 24974731..24975228 | 112..609 | 100 | -> | Plus |
| arm_3R | 24975291..24975459 | 610..779 | 98 | | Plus |
