MXO03058.5prime Sequence
691 bp (688 high quality bases) assembled on 2007-05-24
> MXO03058.5prime
CAGTCGACATGACAACGACCACATCACCTATAGAAACCACACAGACCACA
TTTACGGTTCGCAAGATGACGGGCCGGCGAATGTCAAAGCTATCCACAGT
CCTGCTGTTCTGCGCCGCCTTGCTGCTGACCAAGTCCTGCGGCATCCTGG
CGCTCAGCGGCGACGGTTTGCCCCAATCCCAGGATGTGGGCCAGGCGGAG
CTATGGAGCGATGATGCCACCACCACCATCATTTCGCCCAGCGAGGAGAA
CAGCGGTTCCGGTGGCTGGGAACTGACCACGGAGGCGGACACCACCATAC
CGAGTGAGGAAACTACTGCGGGCAATGAGGAAACCACCGTTTCCGAAGAG
GAGACCTCCACGGACGCCTCTGGAGATGTAGAGACCACCACTGCTGCGCC
GGAAACTTCACCAGCTGACCAGGAGAGCTCTTCCGCTCCCGAAGAGACCA
CTTCCGCTCCCGAAGAGACCACTTCCGCTCCCGAAGAGACCACTTCCGCT
CCCGAGGAGAGCTCTTCCGCTCCCGAGGAGAGCTCTTCCGCTCCCGAGGA
GACCACTTCCGCTCCCGAGGAGAGCTCTTCCGCTCCCGAAGAGAGCTCTT
CCGCTCCCGAGGAGACCACTTCCGCTCCCGAGGAGAGCTCTTCCGCTCCA
GACCAGACATCATCAGCTCCCAACGAAAGCTCTGCTCCTCC
MXO03058.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7874-PA | 1446 | CG7874-RA | 1..683 | 9..691 | 3390 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mur18B-RA | 1615 | CG7874-RA | 40..722 | 9..691 | 3400 | 99.9 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 496..744 | 423..671 | 735 | 86.3 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 517..776 | 423..682 | 730 | 85.4 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 454..672 | 465..683 | 705 | 88.1 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 454..639 | 486..671 | 675 | 90.9 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 536..764 | 421..649 | 635 | 85.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 557..785 | 421..649 | 620 | 84.7 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..630 | 505..683 | 565 | 87.7 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..609 | 526..683 | 520 | 88.6 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 578..785 | 421..628 | 485 | 82.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 599..785 | 421..607 | 470 | 83.4 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..576 | 547..671 | 400 | 88 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 622..792 | 423..593 | 375 | 81.3 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 452..567 | 568..683 | 340 | 86.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 454..546 | 591..683 | 255 | 84.9 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 641..785 | 421..565 | 230 | 77.2 | Plus |
| Mur18B-RA | 1615 | CG7874-RA | 662..785 | 421..544 | 185 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19213476..19214045 | 122..691 | 2850 | 100 | Plus |
| X | 23542271 | X | 19213819..19214067 | 423..671 | 735 | 86.3 | Plus |
| X | 23542271 | X | 19213840..19214099 | 423..682 | 730 | 85.4 | Plus |
| X | 23542271 | X | 19213777..19213995 | 465..683 | 705 | 88.1 | Plus |
| X | 23542271 | X | 19213777..19213962 | 486..671 | 675 | 90.9 | Plus |
| X | 23542271 | X | 19213859..19214087 | 421..649 | 635 | 85.2 | Plus |
| X | 23542271 | X | 19213880..19214108 | 421..649 | 620 | 84.7 | Plus |
| X | 23542271 | X | 19213775..19213953 | 505..683 | 565 | 87.7 | Plus |
| X | 23542271 | X | 19213293..19213406 | 9..122 | 555 | 99.1 | Plus |
| X | 23542271 | X | 19213775..19213932 | 526..683 | 520 | 88.6 | Plus |
| X | 23542271 | X | 19213901..19214108 | 421..628 | 485 | 82.2 | Plus |
| X | 23542271 | X | 19213922..19214108 | 421..607 | 470 | 83.4 | Plus |
| X | 23542271 | X | 19213775..19213899 | 547..671 | 400 | 88 | Plus |
| X | 23542271 | X | 19213945..19214115 | 423..593 | 375 | 81.3 | Plus |
| X | 23542271 | X | 19213775..19213890 | 568..683 | 340 | 86.2 | Plus |
| X | 23542271 | X | 19213777..19213869 | 591..683 | 255 | 84.9 | Plus |
| X | 23542271 | X | 19213964..19214108 | 421..565 | 230 | 77.2 | Plus |
| X | 23542271 | X | 19213985..19214108 | 421..544 | 185 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:00 has no hits.
MXO03058.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:07 Download gff for
MXO03058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7874-PA | 1..683 | 9..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:41 Download gff for
MXO03058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mur18B-RA | 31..722 | 1..691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:05 Download gff for
MXO03058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mur18B-RA | 31..722 | 1..691 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:05 Download gff for
MXO03058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19213284..19213406 | 1..122 | 95 | -> | Plus |
| X | 19213477..19214045 | 123..691 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:41 Download gff for
MXO03058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19107317..19107439 | 1..122 | 95 | -> | Plus |
| arm_X | 19107510..19108078 | 123..691 | 100 | | Plus |
