MXO03059.5prime Sequence
894 bp (823 high quality bases) assembled on 2007-05-24
> MXO03059.5prime
CAGTCGACATGTTAAGCAGGAGGGTCATCGCATTCGCCGCTCTGGCCCTC
ATCCAGATAGCCAGCGGTCAGGCCTCGCAATTCAGCAGGGACGAAAGTCA
GGAGGATCAGAAGACGGAGTTTAACCTGGCCTCCACTCTGACGGGAGGCA
TTACCAGCAGTCGCCATCGCCAGCGGGCCAATCTCAATTCGCAACTTTAT
CCTGGCCTTGGTCAGCTGGGATCGGGTTATGCGGGCGCAACTGGATCCAT
CGACGATGCCCATGGCCATGAGCAGGGTGGCTCTGGCGTACGAGTGGCCA
GTACGAACTCCGTTGTTTTTCCTGGCAACCAGTCACCAAATCCGGCACTC
ACAATTACAGGAGGTCACCAGATTCCCGCTTATCCGCCTCCGGGTTTTCC
TGGACAACAGGCTCCAGTTCCGTACCCAGCTGCAGGAGGCTCTTCAGGAG
GATCCTCATCATCCGGTGGTTACCAAAGTGCAGGTGCTGTTTCTCCTCCT
GGCTATCCTGTTGCTGGAGCAGTTCCTGCTCAGTATCCGGTGGGAGTTCC
TCCCCAGCAGCCAGTGGGTGCAGGAGCACCTGGTTACTTCCCGGGAACTG
GTGCCTATCCTGGCTATCCCTACCCCGGAGTATACTTGCCACAGTACCCA
GCGTACCCTCAACCAGCCCAGTTCCCCGCCTATGGAGTGCTACCCGGAGC
TGTGGCTCAACCAGGAGTTCCTGGAGTAGCTGGAGTTCCGGGAGCACCTG
GAGTGGCAGGAGTGCCCGGAGCAGCTGGTCAGGCTCCTGCCACCAGCGGC
ATGAACTATCATCGCTATCCGGCTCACAATCCCGCTGATCCGAGCCTTTG
GGACATCATTTCTCGATGAACACCGAGTACAAGGAGGATGGCGT
MXO03059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7021-PA | 990 | Ela-RA | 1..846 | 9..854 | 4205 | 99.8 | Plus |
| CG7021-PB | 930 | Ela-RB | 293..786 | 361..854 | 2445 | 99.7 | Plus |
| CG7021-PB | 930 | Ela-RB | 1..293 | 9..301 | 1465 | 100 | Plus |
| CG7021-PA | 990 | Ela-RA | 847..887 | 854..894 | 205 | 100 | Plus |
| CG7021-PB | 930 | Ela-RB | 787..827 | 854..894 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ela-RC | 2135 | CG7021-RC | 20..907 | 8..894 | 4400 | 99.8 | Plus |
| Ela-RA | 1187 | CG7021-RA | 20..907 | 8..894 | 4400 | 99.8 | Plus |
| Ela-RB | 1127 | CG7021-RB | 313..847 | 361..894 | 2635 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24865369..24865846 | 8..485 | 2390 | 100 | Plus |
| 3R | 32079331 | 3R | 24866010..24866423 | 482..894 | 2005 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:06 has no hits.
MXO03059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:11 Download gff for
MXO03059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7021-PA | 1..887 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:21 Download gff for
MXO03059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ela-RA | 13..907 | 1..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:54 Download gff for
MXO03059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ela-RA | 13..907 | 1..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:54 Download gff for
MXO03059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24865362..24865844 | 1..483 | 99 | -> | Plus |
| 3R | 24866012..24866423 | 484..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:21 Download gff for
MXO03059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20691734..20692145 | 484..894 | 99 | | Plus |
| arm_3R | 20691084..20691566 | 1..483 | 99 | -> | Plus |
