MXO03061.5prime Sequence
909 bp (844 high quality bases) assembled on 2007-05-24
> MXO03061.5prime
CAGTCGACATGACTCAAAAGTGCGAGACAACCAACTGCGGCAAGGATGCG
ACCCTGCAGTGTCCCACCTGCCTAAAGTTGGGCATCAAGGGCTCATTTTT
CTGCTCGCAGCCGTGCTTCAAAGGATTCTGGAAGGAGCACAAGGCGATTC
ATGCTTTAGCAGCCGGTGCCTCGAACTCTGCCGAACAGGATGGAGCCTAC
AATCCATGGCCACATTTCCGCTTCACCGGCAAGCTCCGCCCGTTCCCACA
GACTCCCAAGCGAACAGTTCCGAACGCCATACAACGTCCAGATTACGCCG
ATCATCCAGCAGGACGTTCACTCTCGGAGGAAGCACTGCGGGGCACCAAG
ATTAAGGTGCTGGACGACGAGGAGATCGAGGGCATGCGAGTGGCCGGCAG
ATTGGGTCGAGAATGCTTGGATGAGGGTGCCAAAGCCGTGGAGGTGGGCA
TCACCACCGACGAACTGGATCGTTTGGTCCACGAGGCCGCCATCGAACGG
GAGTGCTATCCGTCGCCCCTCAACTACTACAACTTCCCCAAGTCCTGTTG
CACATCGGTCAACGAGGTGATTTGCCACGGCATCCCCGATCAGCGTCCTC
TACAGGATGGAGATCTATGTAACATCGATGTGACCGTCTATCATCGCGGC
TTCCATGGTGATCTCAACGAGACCTTCTTTGTGGGCAATGTCTCGGAGAA
GCACAAGAAACTGGTGCAGGTCACCCACGAGGCGCTCAGCAAGGCCATTG
AGTTCGTGCGTCCGGGTGAAAAGTATCGCGATATTGGCAACGTGATCCAA
AAGTATGTGGCACCACATGGATTCAGCGTGGTGCGCAGCTATTGCGGTCA
TGGCATTCACCGTGTTTTCACACAGCTCCCAATGTGCCTCACTATGCCAA
AAACTCTGC
MXO03061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13630-PA | 1125 | CG13630-RA | 1..861 | 9..869 | 4305 | 100 | Plus |
| CG13630-PA | 1125 | CG13630-RA | 862..902 | 869..909 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13630-RA | 1301 | CG13630-RA | 84..985 | 9..909 | 4485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24718321..24719061 | 899..160 | 3655 | 99.9 | Minus |
| 3R | 32079331 | 3R | 24719128..24719281 | 162..9 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:25:25 has no hits.
MXO03061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:23 Download gff for
MXO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-PA | 1..902 | 9..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:28 Download gff for
MXO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 77..985 | 1..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:07 Download gff for
MXO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13630-RA | 77..985 | 1..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:07 Download gff for
MXO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24718317..24719058 | 163..903 | 99 | <- | Minus |
| 3R | 24719128..24719286 | 1..162 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:28 Download gff for
MXO03061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20544039..20544780 | 163..903 | 99 | <- | Minus |
| arm_3R | 20544850..20545008 | 1..162 | 97 | | Minus |
