MXO03062.5prime Sequence
798 bp (759 high quality bases) assembled on 2007-05-24
> MXO03062.5prime
CAGTCGACATGGCGGCCGCTACCCCTGAAATCCAGTTCTACGAACGCGAG
CTCAACATCCGCCGGGTGATCGAGGAGTGCGACCTGCAGCGCCTGGACCA
GGCCCTCAACATCTGCGACCTGTCTAGCGTGGAGCGTAAGCTGCGCCTCT
GGCAGAAGCTCCTGCCCAGGATCAAGCCCTTCTACGCCGTCAAGTGCAAT
GACGATCCAATGGTGGTCAGGCTGCTGGCCCAGCTGGGAGCCGGATTCGA
CTGCGCCTCCAAAAACGAAGTCAAGCTGGTCTTGGGCTTCGATGTCTCGC
CGGAGCGTATCATCTTCGCCAATCCCTGCCGCCCTGTCAGCCATCTGGAG
TACGCCAAGGAGCACCAGGTGTCCAACGGAACGGTGGACAATGAGTTCGA
GGTATACAAGCTGCACACGCACTATCCCAACTCCAACCTGATCGTGAGAT
TCAAGAGCGAGGCCAAGGAGGCACAGTGCCCACTGGGCGACAAATTTGGC
TGTGATGCGGATGTGGATGCAGCGGCCCTAATGCTGCTGGCCAAATCCTT
GGAGCTGAAGGTGACCGGCACCAGTTTCCACGTCGGCTCCGGATGCAGCG
AGCTGCAGGCCTACGATCGGGCCATCAAGAAGGCCAAGAACCTCTTCAAG
TTCGGCGCACTACTGGGCTATGACATGGACTTTCTGGACATTGGCGGTGG
GTTCCCTGGCAGCGATGACGTAAAGTTTGAGAAGATAGCCGAAAGTGTGA
ATACCTCGGTGCAGCGTCATTTTCCCGACGAACGCGTTCACATAATCG
MXO03062.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8721-PA | 1185 | Odc1-RA | 1..790 | 9..798 | 3950 | 100 | Plus |
| CG8719-PA | 1182 | Odc2-RA | 548..626 | 556..634 | 245 | 92.4 | Plus |
| CG8719-PA | 1182 | Odc2-RA | 85..164 | 93..172 | 150 | 87.5 | Plus |
| CG8719-PA | 1182 | Odc2-RA | 235..261 | 243..269 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Odc1-RA | 1253 | CG8721-RA | 24..817 | 5..798 | 3955 | 99.9 | Plus |
| Odc2-RA | 1268 | CG8719-RA | 58..667 | 48..657 | 1295 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8005624..8005926 | 432..734 | 1500 | 99.7 | Plus |
| 2R | 25286936 | 2R | 8004847..8005122 | 5..280 | 1365 | 99.6 | Plus |
| 2R | 25286936 | 2R | 8005415..8005573 | 278..436 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 8007993..8008218 | 432..657 | 530 | 82.3 | Plus |
| 2R | 25286936 | 2R | 8007303..8007535 | 48..280 | 520 | 81.5 | Plus |
| 2R | 25286936 | 2R | 8005982..8006047 | 733..798 | 330 | 100 | Plus |
| 2R | 25286936 | 2R | 8007806..8007945 | 297..436 | 280 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:47 has no hits.
MXO03062.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:28 Download gff for
MXO03062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8721-PA | 1..790 | 9..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:57 Download gff for
MXO03062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Odc1-RA | 19..817 | 1..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:00 Download gff for
MXO03062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Odc1-RA | 19..817 | 1..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:00 Download gff for
MXO03062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8005629..8005926 | 437..734 | 100 | -> | Plus |
| 2R | 8005984..8006047 | 735..798 | 100 | | Plus |
| 2R | 8004842..8005120 | 1..278 | 98 | -> | Plus |
| 2R | 8005416..8005573 | 279..436 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:57 Download gff for
MXO03062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3892347..3892625 | 1..278 | 98 | -> | Plus |
| arm_2R | 3892921..3893078 | 279..436 | 100 | -> | Plus |
| arm_2R | 3893134..3893431 | 437..734 | 100 | -> | Plus |
| arm_2R | 3893489..3893552 | 735..798 | 100 | | Plus |
