MXO03063.5prime Sequence
820 bp (702 high quality bases) assembled on 2007-05-24
> MXO03063.5prime
CAGTCGACATGGCATTTTGCGGCCACGTTACTTCCTCTGGACAAATAGTC
CTGCGGGATGAGATCTTCAGCAGCAGGACTTGTATTGCGCGCTCCCCGTC
ATCCGGAGGCTCACTAAACTCCATGTCTTCGCCGAGCTCGCTCGCCCAGA
ACACCACACGCACATACTTCTTCAAGGACGACGGTGGAAATCCTTCGCCC
CAATCTACGGACAACTGGTCGCTCGGCGGACTCAAGCGATCGGAGATCCA
GAGCAACTTGGTGCCCTCGCTGTGTCTCAGCTCGCAGGAAAGCTCCCTCA
ACTATCTCAGCCACTGCAAGGGAATTAAGGTGGACCGCCAACCAGAGGCC
GCCTATCAGAACTGGTACTCAGCCAAGCAGCAGCAATTACTAGAGAAGCA
GCGGCGAATCAAGGAGGAGCAGGAGTTCAAGCAGCAGCGGACGGAGGAGC
GCAAGCAGCTGGCCAGGATGTGCTACGAGCAGTGGCTAAAGGACAAGGCC
CGCCAGGCGGCAAACTTGCAGCTGGAGAGCCACATCCAAGACGCGGCCAT
GAAGGCCAGCATAGCTCTGCGCAAGAATCCGTTGGAGTCACTGCGCAAGA
ATCCCGTCGTATCGTCCTTATCCGGACTGGGATCGCTGGGATCCGGGCCG
AGCTCATCGACGGCACCCAGACGCATTCGCAAGGTGTCCAAGGACGAGAT
TCGCAGGGTCGTTGAGGACTGGTGGCTAAAAAAGCAGAGTCAGCAGCAGG
CGCAGCGCGAGGAGAAGCGACGCGCCATGTTGTCCAAGGCCTTGAAAGAG
GAACAGCGCCGGCAACTGGC
MXO03063.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7251-PA | 966 | CG7251-RA | 1..812 | 9..820 | 4035 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7251-RB | 1243 | CG7251-RB | 124..935 | 9..820 | 4045 | 99.9 | Plus |
| CG7251-RA | 1209 | CG7251-RA | 124..935 | 9..820 | 4045 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5587423..5587915 | 820..328 | 2465 | 100 | Minus |
| 2L | 23513712 | 2L | 5587969..5588291 | 331..9 | 1600 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-28 22:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6937 | 370..506 | 139 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6860 | 376..459 | 123 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6818 | 376..459 | 123 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6818 | 376..438 | 117 | 65.1 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4505..4573 | 374..442 | 111 | 62.3 | Plus |
MXO03063.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:33 Download gff for
MXO03063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7251-PA | 1..812 | 9..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:03 Download gff for
MXO03063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7251-RA | 118..935 | 1..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:32 Download gff for
MXO03063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7251-RA | 118..935 | 1..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:32 Download gff for
MXO03063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5587423..5587913 | 330..820 | 100 | <- | Minus |
| 2L | 5587971..5588296 | 1..329 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:03 Download gff for
MXO03063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5587423..5587913 | 330..820 | 100 | <- | Minus |
| arm_2L | 5587971..5588296 | 1..329 | 98 | | Minus |
