MXO03066.5prime Sequence
673 bp (190 high quality bases) assembled on 2007-05-24
> MXO03066.5prime
CAATCGACATGAGCGCCTATTATCGGCGCGCGGCGTGTGCGGAAGAAGAG
CCCAAGCCGAGGGTCATCCTTCAAGTTGGAGATGAACGAGTCTGGCTACA
CATCCTTCCTGGCGCTGCACAATTCCACCGCGGAGACGCCATTTTTATTG
GAGGACGCTGAGGGCGAAAACTGTCGCAATGCATCGAATACCTCAACATT
CTTTCGGGGGCTGAACACGCCCAGGGGCCACCAAGAACGGGACCTTTACT
GGGGCAAGCCCTATCCCAGAACACAGCCCCAAAAGAAATTTTCCGCGGAG
GAGGAGCCTTTCTCTATGACTCCGCGTCTGCAGGATGAGCATAGTCTGCC
CGAGCGACGCAAGAAACACTTTCAATCGCCACACAGTAGCCCCAAGAAGT
CCAAAAAGCTGCTCTTTCCCCACATAGAAGAACCGCCCAAGAATCGCTTC
TACGGCGGTGTCGAAAAGCTGGATATCGTGGCCAAGCTGGCGCAATGGCG
ACCGGCACTGCAGTGCATACTGCGTCATGTGGGCGCCCACACGCTGGACG
TGATGACCGAGGTATCGCCGGCCTGCAAGCACGCTGTTTATCGCAGCCAA
CGCGACTTGGAGCGCCTACAGAACCACCGACTCAAATTGAATCTAACCAA
AGACAATCCTCACGTGCCCAAGC
MXO03066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10800-PA | 1236 | Rca1-RA | 29..664 | 38..673 | 2880 | 98.1 | Plus |
| CG10800-PA | 1236 | Rca1-RA | 1..28 | 9..36 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rca1-RA | 1552 | CG10800-RA | 108..771 | 9..673 | 3120 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6852422..6853085 | 9..673 | 3095 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:23 has no hits.
MXO03066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:48 Download gff for
MXO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10800-PA | 1..664 | 9..673 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:23 Download gff for
MXO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 100..771 | 1..673 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:32 Download gff for
MXO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rca1-RA | 100..771 | 1..673 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:32 Download gff for
MXO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6852414..6853085 | 1..673 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:23 Download gff for
MXO03066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6852414..6853085 | 1..673 | 97 | | Plus |
