MXO03067.5prime Sequence
855 bp (772 high quality bases) assembled on 2007-05-24
> MXO03067.5prime
CAGTCGACATGGAGGAACCGAAAAGTGTACCCACAGCGGAGCTTCCCAGC
ACATCAACCGGGGCATCGTCGTCCTCATCGACTTTGTCCAACAACGTGAG
CTACGACAAGATAGCCTGGACTCGGGATATCACAGAACCCTTGGCTGAGG
AGTCATCTACAAGTCAATTGCGCCCGCTGGGTACCTCGATTCCAACCAAT
TCGACGGCATCGGAACTGAAGAAGTCCAACACTTCGTATTCCTTTACTGG
AGACTATCTATCTGGTGGCAATAAGGCCGATCTGAAGGGTGGCTATCCAT
TCGGCGGCACCGATACGGACACAAAAGCCAACGAAAAGGACAAGGAGAAG
GAACATACCGCAGACGACTCACTCTACGAGTGCAACATATGCCTGGACAC
CGCCAAGGATGCTGTGGTCAGCATGTGCGGCCATCTGTTCTGCTGGCCGT
GCCTGCATCAGTGGCTCCTGACGCGTCCCAATCGCAAACTCTGTCCCGTT
TGTAAGGCTGCCGTTGATAAGGATAAGGTCATACCGCTGTACGGAAGAAA
TAGTACACACCAGGAAGATCCACGTAACAAAGTTCCACCACGCCCCGCTG
GACAACGTACAGAACCAGATCCTGTTCCCGGGTTCCCTGGATTCGGATTC
GGCGACGGATTTCACATGTCTTTCGGTATTGGAGCTTTTCCTTTCGGGTT
CATAACATCTACGCTCAACTTTGGCGAACCACGTCCACCTGCTGCTAATC
GGGGAACAAGGCAATACGAGGATGAACAGACCCTGTCCAAGCTGTTTTCG
TATTTGGCCGTTGTGTGGATATTGTGGCTGTTCTATGCAGCAAGCTTTCT
AGACC
MXO03067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8974-PC | 834 | CG8974-RC | 1..831 | 9..839 | 4155 | 100 | Plus |
| CG8974-PA | 834 | CG8974-RA | 1..831 | 9..839 | 4155 | 100 | Plus |
| CG8974-PB | 834 | CG8974-RB | 1..831 | 9..839 | 4155 | 100 | Plus |
| CG8974-PD | 834 | CG8974-RD | 1..831 | 9..839 | 4155 | 100 | Plus |
| CG8974-PE | 834 | CG8974-RE | 1..831 | 9..839 | 4155 | 100 | Plus |
| CG32581-PA | 675 | CG32581-RA | 1..544 | 9..552 | 2695 | 99.8 | Plus |
| CG32581-PA | 675 | CG32581-RA | 545..675 | 575..705 | 655 | 100 | Plus |
| CG32847-PB | 495 | CG32847-RB | 44..119 | 373..448 | 155 | 88.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8974-RE | 1317 | CG8974-RE | 103..934 | 8..839 | 4160 | 100 | Plus |
| CG8974-RD | 1280 | CG8974-RD | 66..897 | 8..839 | 4160 | 100 | Plus |
| CG8974-RB | 1389 | CG8974-RB | 175..1006 | 8..839 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15794497..15795063 | 574..8 | 2835 | 100 | Minus |
| X | 23542271 | X | 15797667..15798233 | 574..8 | 2820 | 99.8 | Minus |
| X | 23542271 | X | 15794267..15794434 | 741..574 | 840 | 100 | Minus |
| X | 23542271 | X | 15797437..15797604 | 741..574 | 795 | 98.2 | Minus |
| X | 23542271 | X | 15794104..15794202 | 839..741 | 495 | 100 | Minus |
| 3L | 28110227 | 3L | 15121665..15121843 | 373..551 | 310 | 78.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:35 has no hits.
MXO03067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:54 Download gff for
MXO03067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8974-PA | 1..834 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:59 Download gff for
MXO03067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8974-RB | 170..1015 | 1..850 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:37 Download gff for
MXO03067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8974-RB | 170..1015 | 1..850 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:37 Download gff for
MXO03067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15794267..15794433 | 575..741 | 100 | <- | Minus |
| X | 15794095..15794201 | 742..850 | 95 | <- | Minus |
| X | 15794497..15795068 | 1..574 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:59 Download gff for
MXO03067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15688128..15688234 | 742..850 | 95 | <- | Minus |
| arm_X | 15688300..15688466 | 575..741 | 100 | <- | Minus |
| arm_X | 15688530..15689101 | 1..574 | 99 | | Minus |
