MXO03068.5prime Sequence
875 bp (797 high quality bases) assembled on 2007-05-24
> MXO03068.5prime
CAGTCGACATGCTCCTGCTGATACCGCTTTTCCTGACCCTTTTGGGGGCT
GAGGCCCAGCAATTTGGCAAAGCTATCATGCATTTTGGCAACTGCAACTC
GGTGGAATTCGGTAGGGGCACCTGTATCGAGAAGAAGGACTGCGACTTTT
ATGCCGTAGATAAACTTATGGAATTGGCCAGCAAACAACAGTGCTTCTCC
CGCCAGCGACCCGATCTGGTTTGCTGCCCCCGCGAGACGAATATTATACC
GCCATTGGCACCCAGGATCAGTAATGGGACCACTAATGCCACGAGCAGCA
CCACAACGCTGAAACTGCTGCCTCGCACCACGCCACGCCCACCCAGCGGT
ATCGACCAACTGCCCGAGCATCCGTACTGCGGCTCCGCCTTTTCGTTTCG
CTTGGTCGGTGGTCATAATACCGGACTCTTCGAGTTCCCGTGGACCACTC
TGCTGGAGTACGAGACAGTGAGCGGTGGCAAGGACTATGCGTGCGGCGCA
TCCTTTATCGCCCAGAGATGGCTCTTAACGGCCGCCCACTGCATTCACAC
AATGGGCAGGAATCTCACCGCAGCCATTTTGGGTGAATGGAATCGGGACA
CCGATCCGGATTGCGAGAATGATTTGAATGGCGTACGCGAATGTGCTCCG
CCGCATATCCGGGTGACCATCGATCGAATATTGCCGCATGCGCAGTACTC
GGAATTGAACTATAGAAACGATATAGCCCTGCTGCGTTTATCACGTCCGG
TGAACTGGCTGCAGATGCAGAATCTGGAGCCCGTCTGTTTGCCACCGCAG
AGGGGCAGGTATGCCAATCAGCTGGCCGGCTCAACCGCCGATGTTTCCGG
CTGGGGCAAGACCGAGTCCAGCGGC
MXO03068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2045-PA | 1194 | Ser7-RA | 1..867 | 9..875 | 4310 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ser7-RA | 1413 | CG2045-RA | 105..971 | 9..875 | 4320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9865971..9866628 | 218..875 | 3275 | 99.8 | Plus |
| X | 23542271 | X | 9865459..9865609 | 70..220 | 755 | 100 | Plus |
| X | 23542271 | X | 9865337..9865397 | 9..69 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:24 has no hits.
MXO03068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:00 Download gff for
MXO03068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2045-PA | 1..867 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:19 Download gff for
MXO03068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser7-RA | 99..971 | 1..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:52 Download gff for
MXO03068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ser7-RA | 99..971 | 1..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:52 Download gff for
MXO03068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9865331..9865397 | 1..69 | 94 | -> | Plus |
| X | 9865459..9865607 | 70..218 | 100 | -> | Plus |
| X | 9865972..9866628 | 219..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:19 Download gff for
MXO03068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9759364..9759430 | 1..69 | 94 | -> | Plus |
| arm_X | 9759492..9759640 | 70..218 | 100 | -> | Plus |
| arm_X | 9760005..9760661 | 219..875 | 99 | | Plus |
