MXO03071.5prime Sequence
855 bp (789 high quality bases) assembled on 2007-05-24
> MXO03071.5prime
CAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCAATGAGAGC
CCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCCCTGAAGGG
CTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCGTCCCTACA
GCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACGAGCCCGCC
ACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTGCCAGTGAG
CCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCATCACTACA
GCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGAATGATCAT
CTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGCTATGGTCT
CTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCCCCTGGAGT
ACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTCGTCGCTCG
GCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGCGAGCCGTA
CGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCCACGCGGAG
GACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCACGCGGCCC
AGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTTGAACGACT
CCCCATCTTTCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCCAGCC
CCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCTTCTGGTGGGACGTG
GATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCCCGTGCCTCGAACCC
CGTGG
MXO03071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6803-PD | 939 | Zeelin1-RD | 1..847 | 9..855 | 4210 | 99.8 | Plus |
CG6803-PB | 1098 | Zeelin1-RB | 1..689 | 9..697 | 3445 | 100 | Plus |
CG6803-PE | 501 | Zeelin1-RE | 1..484 | 9..492 | 2420 | 100 | Plus |
CG6803-PC | 507 | Zeelin1-RC | 1..481 | 9..489 | 2405 | 100 | Plus |
CG6803-PA | 474 | Zeelin1-RA | 1..301 | 9..309 | 1505 | 100 | Plus |
CG6803-PA | 474 | Zeelin1-RA | 302..462 | 331..491 | 805 | 100 | Plus |
CG6803-PB | 1098 | Zeelin1-RB | 845..1003 | 697..855 | 770 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RJ | 1954 | CG6803-RJ | 115..961 | 9..855 | 4220 | 99.9 | Plus |
Mf-RF | 2020 | CG6803-RF | 181..1027 | 9..855 | 4220 | 99.9 | Plus |
Mf-RD | 1783 | CG6803-RD | 115..961 | 9..855 | 4220 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15178280..15178490 | 309..99 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 15174136..15174344 | 697..489 | 1045 | 100 | Minus |
3R | 32079331 | 3R | 15172672..15172830 | 855..697 | 780 | 99.4 | Minus |
3R | 32079331 | 3R | 15176184..15176295 | 489..378 | 560 | 100 | Minus |
3R | 32079331 | 3R | 15179038..15179129 | 100..9 | 460 | 100 | Minus |
3R | 32079331 | 3R | 15176362..15176437 | 381..306 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:36 has no hits.
MXO03071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:10 Download gff for
MXO03071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6803-PD | 1..847 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:24 Download gff for
MXO03071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RD | 107..961 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:58 Download gff for
MXO03071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RD | 107..961 | 1..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:58 Download gff for
MXO03071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15172672..15172830 | 697..855 | 99 | <- | Minus |
3R | 15174137..15174343 | 490..696 | 100 | <- | Minus |
3R | 15176184..15176293 | 380..489 | 100 | <- | Minus |
3R | 15176364..15176433 | 310..379 | 100 | <- | Minus |
3R | 15178280..15178489 | 100..309 | 100 | <- | Minus |
3R | 15179039..15179135 | 1..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:24 Download gff for
MXO03071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10998394..10998552 | 697..855 | 99 | <- | Minus |
arm_3R | 10999859..11000065 | 490..696 | 100 | <- | Minus |
arm_3R | 11001906..11002015 | 380..489 | 100 | <- | Minus |
arm_3R | 11002086..11002155 | 310..379 | 100 | <- | Minus |
arm_3R | 11004002..11004211 | 100..309 | 100 | <- | Minus |
arm_3R | 11004761..11004857 | 1..99 | 95 | | Minus |