Clone MXO03071 Report

Search the DGRC for MXO03071

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:30
Well:71
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptMf-RD
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03071.5prime Sequence

855 bp (789 high quality bases) assembled on 2007-05-24

> MXO03071.5prime
CAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCAATGAGAGC
CCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCCCTGAAGGG
CTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCGTCCCTACA
GCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACGAGCCCGCC
ACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTGCCAGTGAG
CCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCATCACTACA
GCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGAATGATCAT
CTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGCTATGGTCT
CTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCCCCTGGAGT
ACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGCTCGTCGCTCG
GCCTCGCCGTTCCGCCCTGCCAGGACGACCCGTGCCGGCAGCGAGCCGTA
CGTGCCACCGCCGAGCTACTGGAACCGCGAGGGCAGCGTGCCACGCGGAG
GACCCTCGGTCTTCGATCGTGCCACCAGCTTGGCCCCGTTCACGCGGCCC
AGCTTCCGTGCCAGCTCCCTGGAGCCGCTGGACGAACTCTTTGAACGACT
CCCCATCTTTCACCCACGCAACCGCTTCAGGGATCTGCTGAGCCCCAGCC
CCAACTTGCCGATCTCCTCGATTGTGCGCGATCCCTTCTGGTGGGACGTG
GATGACCTGGTGCCCTTCCGCGCCACCTCGGTGCCCCGTGCCTCGAACCC
CGTGG

MXO03071.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6803-PD 939 Zeelin1-RD 1..847 9..855 4210 99.8 Plus
CG6803-PB 1098 Zeelin1-RB 1..689 9..697 3445 100 Plus
CG6803-PE 501 Zeelin1-RE 1..484 9..492 2420 100 Plus
CG6803-PC 507 Zeelin1-RC 1..481 9..489 2405 100 Plus
CG6803-PA 474 Zeelin1-RA 1..301 9..309 1505 100 Plus
CG6803-PA 474 Zeelin1-RA 302..462 331..491 805 100 Plus
CG6803-PB 1098 Zeelin1-RB 845..1003 697..855 770 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
Mf-RJ 1954 CG6803-RJ 115..961 9..855 4220 99.9 Plus
Mf-RF 2020 CG6803-RF 181..1027 9..855 4220 99.9 Plus
Mf-RD 1783 CG6803-RD 115..961 9..855 4220 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15178280..15178490 309..99 1055 100 Minus
3R 32079331 3R 15174136..15174344 697..489 1045 100 Minus
3R 32079331 3R 15172672..15172830 855..697 780 99.4 Minus
3R 32079331 3R 15176184..15176295 489..378 560 100 Minus
3R 32079331 3R 15179038..15179129 100..9 460 100 Minus
3R 32079331 3R 15176362..15176437 381..306 365 98.7 Minus
Blast to na_te.dros performed on 2014-11-28 20:30:36 has no hits.

MXO03071.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:10 Download gff for MXO03071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6803-PD 1..847 9..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:24 Download gff for MXO03071.5prime
Subject Subject Range Query Range Percent Splice Strand
Mf-RD 107..961 1..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:58 Download gff for MXO03071.5prime
Subject Subject Range Query Range Percent Splice Strand
Mf-RD 107..961 1..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:58 Download gff for MXO03071.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15172672..15172830 697..855 99 <- Minus
3R 15174137..15174343 490..696 100 <- Minus
3R 15176184..15176293 380..489 100 <- Minus
3R 15176364..15176433 310..379 100 <- Minus
3R 15178280..15178489 100..309 100 <- Minus
3R 15179039..15179135 1..99 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:24 Download gff for MXO03071.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10998394..10998552 697..855 99 <- Minus
arm_3R 10999859..11000065 490..696 100 <- Minus
arm_3R 11001906..11002015 380..489 100 <- Minus
arm_3R 11002086..11002155 310..379 100 <- Minus
arm_3R 11004002..11004211 100..309 100 <- Minus
arm_3R 11004761..11004857 1..99 95   Minus