MXO03073.5prime Sequence
600 bp (404 high quality bases) assembled on 2007-05-24
> MXO03073.5prime
CAGTCGACATGAGTGCAACACATGACCAAAAAGTTGTGATAAATAAACGA
TTAAAAGGCTTAAGCCGAGAGGCACTTGAAAAACTGACTCAAACCGAGCT
GATCGACAAGGTTATCCAACTGGAGGCCTATAACTTTCAGTTGCGGAATC
TGCTGCAAAAAAAGTTAAGCGAGAAAGATAAACATGATAAGGAATACTCT
GGATTAATGGGAAACGAAGCGGAGGGCAAAGTTAGCCAGGTGGCCAAAAC
ATCCACCAAAGTGCAGAAGATACGTAAGTTCGATTGGAGCAGTGCACACA
AGCGTCATGTCTTGCTTAACATTACCTACTTTGGTTGGGATTATCAAGGA
TTTGCCTGCCAGGAGGATTCCAATGATACTATCGAATCCAACTTGTTCCG
CGCTCTAGCTCGTACCTGCCTCATCAAATCTCGCGCCACTTCCAATTATC
ACCGCTGTGGACGCTCAGACTAGGAGGTGAGCGCCTTCTGCCAGGTTATC
TCCGTAGATCTGCGCAGCAAGCATCCACCAGAATCCCACCTGGATCCCAC
AGCGCTTTCCTCCAAGATTGACTACTGTGGACTCCTGAAACGAGCGCTGC
MXO03073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3045-PA | 1500 | CG3045-RA | 1..592 | 9..600 | 2535 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3045-RA | 1663 | CG3045-RA | 93..684 | 9..600 | 2705 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22174316..22174599 | 292..9 | 1330 | 97.9 | Minus |
| 2R | 25286936 | 2R | 22173896..22174112 | 600..384 | 935 | 95.4 | Minus |
| 2R | 25286936 | 2R | 22174168..22174262 | 384..290 | 460 | 98.9 | Minus |
Blast to na_te.dros performed 2014-11-28 19:39:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 67..132 | 124..190 | 107 | 64.2 | Plus |
MXO03073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:20 Download gff for
MXO03073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3045-PA | 1..592 | 9..600 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:21 Download gff for
MXO03073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3045-RA | 85..684 | 1..600 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:22 Download gff for
MXO03073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3045-RA | 85..684 | 1..600 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:22 Download gff for
MXO03073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22173896..22174111 | 385..600 | 95 | <- | Minus |
| 2R | 22174168..22174259 | 293..384 | 98 | <- | Minus |
| 2R | 22174316..22174606 | 1..292 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:21 Download gff for
MXO03073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18061401..18061616 | 385..600 | 95 | <- | Minus |
| arm_2R | 18061673..18061764 | 293..384 | 98 | <- | Minus |
| arm_2R | 18061821..18062111 | 1..292 | 96 | | Minus |
