MXO03076.5prime Sequence
789 bp (729 high quality bases) assembled on 2007-05-24
> MXO03076.5prime
CAGTCGACATGCACATCCTCAGCATATCTCTAATGGCGGTCCTGCCGGCC
ATCGCCTTAGCCGGTCTCTGTGGGGTTGAGCCCGATGCGGGTTTGTTGGA
TCAGCGGCTGAACCTCTATAAGGGCCAACAGAACTTTGCCGTGTCCATGC
TGAACGTGATTCGGCAGAGCACTCCCAATGAGAACGTCTTCTTCTCGCCG
TACAGCACGTATCATGCCCTGCTCCTCGCCTATTTCGGATCCTCTGGTGA
CACGGAGAAGGAGTTGGCCAAGGTGCTGCATCTGGATTGGGCCGACTCGA
AGGAGGTGGTGCGCAGTGCCTATATTCTGGAGAAGATGAACCGTAAGGAG
CGGCAGAGCAAAATGCCTCTCGAGTTCTCCTCAGCCGATCGCATATTCTT
CGCCAATGATCTGCATGTGACCGAATGCGCAAGGAATCGTCTGGCCGAGG
AGGTGCAGCAGATCGACTTCAAGAGCCAGACGGAGGAGTCGCGCAAGCAA
ATCAACGATTGGATTGCCAAGCAGACGCACGATCAAATCCGCAATATGCT
CAGTGCCGATGAAATCACTCCGCGCACTCGTTTGGTCCTGGCCAACGCCG
CCTATCTGAAGGGTCAGTGGCTCAGTCAGTTCAAGACGGAGAAGACGGTG
CCCATGCCCTTCTACACGTCTCCGTCGAACTACTCTCTCGTGTCCATGAT
GCAACAGAAGGGCACCTTCTTACTGAATGTCGACGAACAGCTCCGCGCCC
ACGTGCTTCAGCTGCCCTATCGCACCGTCTTTGAGTCTC
MXO03076.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18525-PA | 1284 | Spn5-RA | 1..781 | 9..789 | 3905 | 100 | Plus |
| CG18525-PB | 1284 | Spn5-RB | 1..781 | 9..789 | 3905 | 100 | Plus |
| CG6687-PA | 1281 | CG6687-RA | 568..621 | 582..635 | 145 | 90.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn88Ea-RB | 1518 | CG18525-RB | 110..891 | 8..789 | 3910 | 100 | Plus |
| Spn88Ea-RA | 1521 | CG18525-RA | 113..894 | 8..789 | 3910 | 100 | Plus |
| Spn88Eb-RA | 1431 | CG6687-RA | 572..723 | 495..646 | 295 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15203756..15204537 | 789..8 | 3910 | 100 | Minus |
| 3R | 32079331 | 3R | 15207473..15207624 | 646..495 | 295 | 79.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:08 has no hits.
MXO03076.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:33 Download gff for
MXO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18525-PB | 1..781 | 9..789 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:04 Download gff for
MXO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn88Ea-RA | 108..894 | 1..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:12 Download gff for
MXO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn88Ea-RA | 108..894 | 1..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:12 Download gff for
MXO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15203756..15204540 | 1..789 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:04 Download gff for
MXO03076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11029478..11030262 | 1..789 | 99 | | Minus |
