MXO03077.5prime Sequence
693 bp (463 high quality bases) assembled on 2007-05-24
> MXO03077.5prime
CAATCGACATGGGCTTATTCGGCAGAACTCCCAGTAGAGATCCCAAAGAG
CAGGTGCAGGAGTGGACGCATAAGATACGGAAAGAGGGCAACCAGCTGGA
TCGCCAGATCCGAAGTATCCAGCGCGAGGAAGAGAAAGTAAAACGCTCGC
TGAAACGGGCAGCACAGAAAAATGACCGCGACACCTGCGTCATTCTTGCC
AAGGAGATTGTGAATGCGCGAAAGGCCATCAACCGCATATATACGTCGAA
GGCGCACCTCACCTCCATTCAGATGCAGATGAAAAATCAGCTATCCACCT
TGCGTGTAGCTGGATCTCTGCAAAAGTCGACAGAGGTCTTGCAAGCTATG
CAGAGCCTGGTGCGCTATCCAGAGCTTGCAGGCATCATGCGCGACATGTC
AAAGGAAATGATGAAGGCCGGCATTATTGAGGAGATGCTAGACGAGACCA
TGGACTCGCTGGAGGAGTCCGAGGAGCTGGAGGAGGAGGCAAGCAAGGAA
GTGGACAAGGTTTTGTGGGAGATCACAGATGGAAAGCTCGGGGAAGCTCC
CCTGCCTCCAGAGGCTACACCGGCGGACAAGGCGTCTGCGTCTGCTGCGC
GCGTCGAGGCTGAGCAGGACGATGAGGAGGGTGAGGAACTGCAAGAGATG
CACAGCCGCCTGGCCTCACTGCAATCTGCAAGCTTTCTAGACC
MXO03077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9779-PA | 672 | CG9779-RA | 1..659 | 9..667 | 3120 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps24-RA | 1114 | CG9779-RA | 116..785 | 8..677 | 3215 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4309976..4310358 | 677..295 | 1825 | 98.4 | Minus |
| 3R | 32079331 | 3R | 4310414..4310656 | 294..52 | 1185 | 99.2 | Minus |
| 3R | 32079331 | 3R | 4310785..4310832 | 55..8 | 225 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:41 has no hits.
MXO03077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:38 Download gff for
MXO03077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9779-PA | 1..672 | 9..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:46 Download gff for
MXO03077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vps24-RA | 110..788 | 1..681 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:57 Download gff for
MXO03077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps24-RA | 110..788 | 1..681 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:57 Download gff for
MXO03077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4310414..4310654 | 54..294 | 99 | <- | Minus |
| 3R | 4309972..4310358 | 295..681 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:46 Download gff for
MXO03077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 135694..136080 | 295..681 | 97 | <- | Minus |
| arm_3R | 136136..136376 | 54..294 | 99 | <- | Minus |
