MXO03078.5prime Sequence
873 bp (815 high quality bases) assembled on 2007-05-24
> MXO03078.5prime
CAGTCGACATGTTTTTGCAACTCTTATCTATAAGGTTGGCTATGTCACTG
ATCCTTTTAATCAGTGGACAATGGACTTCAGCTCGTCCCCAGAATCCTTA
CTACGTGGAAAACGGCGGACATGGATATCCGAACCATCATCGCCACCATG
GTCATCACGTACATGGGTCAGGATATGGCCCAGGATCCATTGGACCACCT
CCCTTTGTCTTCGGTCGTTTTCCACCGCCTCCTTCGTATTATCCAGATAA
TCAACCATCAGGAGGTCGTCAACCGTATTATCCGAACGTCGGTGCAGTTC
AAGGACAACCTGGCAGTCAATTTCACCAACATGGAGGTGGTTTTCATAGA
GGACAACAGGAATATCCCTACCCTGTAGGTGATTTTAACAGGGGACATCC
AGGCCTCCAGCAACCGGGTGGAGATTTCAACAGGGGCCAACCAGGTTTTC
AGCAGCCAGGAAATGAATTCAATAGACCACAACCATCTGGAAGGGCGCCA
GGACATCAACAATCTGGCAGCCATGAGGAGCTACCCACCTACCCTCGAGG
ATTGGAACCCCAGCAGCCGGGTGGTGATCCAAATACCCTACAGCCTCGAC
CTGGCCAAAACCCTGGTGGATTCGAACAGCCAAATGAAAATGCTGGCGGA
TTCCAACAGTCAGGCCAAAATAATGGGGGGTTCCGGCAACCAAGCCAAAA
TTCTGGAGGATTCCAACAGCCAGGCCAGAGTACTGGAGGATTCCAGCAAC
CAGGCCAGAGTTCTGGGGGATTCCAACAGCCAGGCCAGAGTACTGGGGGA
TTCCAACAGCCAGGCCAGAGTACTGGAGGATTCAACAGCCAGGCCAGAGT
ACTGGAGGATTCGGCAGCCAGAC
MXO03078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11395-PA | 1371 | CG11395-RA | 1..825 | 9..833 | 4125 | 100 | Plus |
| CG11395-PA | 1371 | CG11395-RA | 725..855 | 703..833 | 455 | 93.8 | Plus |
| CG11395-PA | 1371 | CG11395-RA | 753..885 | 701..833 | 390 | 91.7 | Plus |
| CG11395-PA | 1371 | CG11395-RA | 790..901 | 708..819 | 285 | 90.1 | Plus |
| CG11395-PA | 1371 | CG11395-RA | 815..901 | 703..789 | 285 | 93.1 | Plus |
| CG11395-PA | 1371 | CG11395-RA | 826..855 | 833..862 | 150 | 100 | Plus |
| CG11395-PA | 1371 | CG11395-RA | 796..825 | 833..862 | 150 | 100 | Plus |
| CG11395-PA | 1371 | CG11395-RA | 706..735 | 833..862 | 150 | 100 | Plus |
| CG11395-PA | 1371 | CG11395-RA | 845..908 | 703..766 | 145 | 89 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11395-RB | 2279 | CG11395-RB | 53..919 | 9..873 | 4285 | 99.8 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 53..919 | 9..873 | 4285 | 99.8 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 741..962 | 637..857 | 680 | 87.4 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 741..962 | 637..857 | 680 | 87.4 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 687..937 | 613..862 | 645 | 84.1 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 687..937 | 613..862 | 645 | 84.1 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 657..877 | 643..862 | 555 | 83.7 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 657..877 | 643..862 | 555 | 83.7 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 738..978 | 604..843 | 535 | 81.7 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 738..978 | 604..843 | 535 | 81.7 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 681..847 | 697..862 | 525 | 88 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 681..847 | 697..862 | 525 | 88 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 807..978 | 643..814 | 470 | 84.9 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 807..978 | 643..814 | 470 | 84.9 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 648..817 | 694..862 | 345 | 80.6 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 648..817 | 694..862 | 345 | 80.6 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 807..978 | 613..784 | 335 | 79.7 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 807..978 | 613..784 | 335 | 79.7 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 687..787 | 763..862 | 285 | 86.1 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 687..787 | 763..862 | 285 | 86.1 | Plus |
| CG11395-RB | 2279 | CG11395-RB | 837..978 | 613..754 | 275 | 79.6 | Plus |
| CG11395-RA | 1515 | CG11395-RA | 837..978 | 613..754 | 275 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17137491..17138235 | 131..873 | 3625 | 99.7 | Plus |
| 2R | 25286936 | 2R | 17138057..17138278 | 637..857 | 655 | 87.4 | Plus |
| 2R | 25286936 | 2R | 17138003..17138253 | 613..862 | 620 | 84.1 | Plus |
| 2R | 25286936 | 2R | 17137292..17137414 | 9..131 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 17137973..17138193 | 643..862 | 530 | 83.7 | Plus |
| 2R | 25286936 | 2R | 17138054..17138278 | 604..828 | 510 | 81.8 | Plus |
| 2R | 25286936 | 2R | 17137997..17138163 | 697..862 | 500 | 88 | Plus |
| 2R | 25286936 | 2R | 17138123..17138294 | 643..814 | 470 | 84.9 | Plus |
| 2R | 25286936 | 2R | 17138123..17138294 | 613..784 | 335 | 79.7 | Plus |
| 2R | 25286936 | 2R | 17137964..17138133 | 694..862 | 320 | 80.6 | Plus |
| 2R | 25286936 | 2R | 17138153..17138294 | 613..754 | 275 | 79.6 | Plus |
| 2R | 25286936 | 2R | 17138003..17138103 | 763..862 | 260 | 86.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:59:51 has no hits.
MXO03078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:43 Download gff for
MXO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11395-PA | 1..867 | 9..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:30 Download gff for
MXO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11395-RA | 43..919 | 1..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:19 Download gff for
MXO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11395-RA | 43..919 | 1..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:19 Download gff for
MXO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17137282..17137413 | 1..130 | 96 | -> | Plus |
| 2R | 17137491..17138235 | 131..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:30 Download gff for
MXO03078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13024787..13024918 | 1..130 | 96 | -> | Plus |
| arm_2R | 13024996..13025740 | 131..873 | 99 | | Plus |
