MXO03080.5prime Sequence
740 bp (584 high quality bases) assembled on 2007-05-24
> MXO03080.5prime
CAGTCGACATGACTGACCAACCAACTCCACAGTGGGTGACCAAGGAGCTA
TTCAGCAGCTTGTTGGAACAGAGTAATCGAAATTTCAAGGCGATCATTAA
ATTTGTTCCAACATCAGCGATTAGCAAAGGGGAAAACTATTTGACGATCG
TGCTGCGCATACAAATTGAAATGCAGCTGAAAGATAACAGCATAGAAGAT
GTCAGCTACATACTGAAGATTCCTTTAGTCCCGGAAGATGAGAAGAACGA
CTTCCACGAAATGTTCGATGCCGAACTGGACATGTACGATCATCTGATAC
CAGAATTGGAGGATCTATATGCCAAAAACACTTCCATATCACCAAAATTC
AAGCCTGTTCATCTGAAGTTTCCAGGAGAGCCGGTAAAAAGCGACTACAT
TCTTTTGGAGGATCTGCGGAAGAAGGGATATAGGAATGCCGACAGAACCC
AGGGATTGGAGCAGTTTGAAGTGGAGGCGGTCCTCAAGAAGTTGGCACAG
TGGCACGCAGCCTCTGCAAAAAGAGTAGTCGAGCTGGGTGAATACGAGAA
GGACATCCGGGAGAGTTACTTTACTACTGAGCACCAGAAATTACTCGATG
AATTCAACATTAATTTTTGTATGCCCTTCCTGGAGTGCATGCAGCAATAT
AATCTTGAGCCAGGACAGCTCGTTCTCATAAGCGACTATACATCTCAACT
GACGGATCTGAATATTGAGTTTGGTAAGAACGATCCTCTG
MXO03080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10675-PA | 1230 | CG10675-RA | 1..732 | 9..740 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CHKov2-RA | 1450 | CG10675-RA | 58..789 | 9..740 | 3660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25330423..25330921 | 680..182 | 2495 | 100 | Minus |
| 3R | 32079331 | 3R | 25330968..25331146 | 187..9 | 880 | 99.4 | Minus |
| 3R | 32079331 | 3R | 25330313..25330372 | 740..681 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:33 has no hits.
MXO03080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:54 Download gff for
MXO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10675-PA | 1..732 | 9..740 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:30 Download gff for
MXO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHKov2-RA | 50..789 | 1..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:36 Download gff for
MXO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CHKov2-RA | 50..789 | 1..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:36 Download gff for
MXO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25330313..25330372 | 681..740 | 100 | <- | Minus |
| 3R | 25330423..25330919 | 184..680 | 100 | <- | Minus |
| 3R | 25330972..25331153 | 1..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:30 Download gff for
MXO03080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21156035..21156094 | 681..740 | 100 | <- | Minus |
| arm_3R | 21156145..21156641 | 184..680 | 100 | <- | Minus |
| arm_3R | 21156694..21156875 | 1..183 | 97 | | Minus |
