MXO03081.5prime Sequence
825 bp (681 high quality bases) assembled on 2007-05-24
> MXO03081.5prime
CAGTCGACATGTCACAAAACCAATCCTACTTCTGGCAAACGACCAGACAC
AATGTATACCTGAAGCGCTCGGCCAAATGGCACATGGCGCTGGCCCTGAT
GGTGGTGCTCACATTCGGCACAATTTGTGCGGCGGAAGCTCAACCGGATA
GTGCGGACAATGCGGTCATTGAATCCGGAATACAGAGCAACTTGGACGTG
CAGGGAGATTTGAATAGGCCAACGGATCTGAGTTCTTTAGCGGAGAAACC
AAAAGATGCTGCGGACCGGCCGAAAACGAAGGGCACCTTTATCGATGCGT
TTACCGCATCGATCTCTGTTATCTTACTAACAGAGCTAGGGGATAAGACT
TTCTTTATCGCTGCCATAATGGCCATGCGCCATCCGCGTTTGATTGTCTT
TGGCGGTGCCATCGCCGCCTTGGCGCTAATGACGGTACTCTCATGCGCAT
TTGGCATGGCAGCGAACTTTATTCCTAAGATTTATACGTATTATATCTCA
ACTGCATTATTTTTAATATTTGGTTTAAAAATGCTGTACGACGGCTACAA
AATGAAACCAACCGACGCTCAGGAAGAACTGGAAGAGGTGCAAACTGATC
TGCGCAAGCGCGAGGATGAGCTGGATCGTGATGTGAACGCGGCGCTGGTG
AATGACGCCGAGAGCGGTCGTCGTCGTCCACAGAAACGGGGTGCCACCTA
CTTCACCATGCGCATCCTGCCCCAGGCCTTCACAATGACGTTCCTGGCCG
AGTGGGGCGATCGCTCCCAACTGACCACCATTATTCTCGCCGCTAGCAAG
GACGTTTACGGCGTTATCGCTGGCG
MXO03081.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4196-PC | 972 | CG4196-RC | 1..817 | 9..825 | 4060 | 99.8 | Plus |
| CG4196-PB | 972 | CG4196-RB | 1..817 | 9..825 | 4060 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42542-RF | 2063 | CG42542-RF | 463..1279 | 9..825 | 4070 | 99.9 | Plus |
| CG42542-RC | 1675 | CG42542-RC | 172..988 | 9..825 | 4070 | 99.9 | Plus |
| CG42542-RB | 1650 | CG42542-RB | 147..963 | 9..825 | 4070 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15199214..15199504 | 189..479 | 1455 | 100 | Plus |
| 3R | 32079331 | 3R | 15198971..15199150 | 9..188 | 900 | 100 | Plus |
| 3R | 32079331 | 3R | 15202022..15202204 | 619..801 | 900 | 99.5 | Plus |
| 3R | 32079331 | 3R | 15199568..15199710 | 478..620 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:49 has no hits.
MXO03081.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:00 Download gff for
MXO03081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4196-PB | 1..817 | 9..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:28 Download gff for
MXO03081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RB | 139..963 | 1..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:03 Download gff for
MXO03081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42542-RB | 139..963 | 1..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:03 Download gff for
MXO03081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15198963..15199150 | 1..188 | 98 | -> | Plus |
| 3R | 15199214..15199504 | 189..479 | 100 | -> | Plus |
| 3R | 15199570..15199710 | 480..620 | 100 | -> | Plus |
| 3R | 15202024..15202203 | 621..800 | 99 | -> | Plus |
| 3R | 15202266..15202290 | 801..825 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:28 Download gff for
MXO03081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11024685..11024872 | 1..188 | 98 | -> | Plus |
| arm_3R | 11024936..11025226 | 189..479 | 100 | -> | Plus |
| arm_3R | 11025292..11025432 | 480..620 | 100 | -> | Plus |
| arm_3R | 11027746..11027925 | 621..800 | 99 | -> | Plus |
| arm_3R | 11027988..11028012 | 801..825 | 100 | | Plus |
