MXO03084.5prime Sequence
917 bp (832 high quality bases) assembled on 2007-05-24
> MXO03084.5prime
CAGTCGACATGGCCGACAGCGAATTCCCGTAGATCCACAGGCCCATATTT
GAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGCAAGAAGAA
TAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCTGGAGGACT
CGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGGATGGCATT
GGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGACGATGAGCT
GGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCTGGACACCA
ACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACCAGGATGCG
ATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGCAATAGTGC
ACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAATACAGCTG
CCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACAAGAAATCT
TCCATTCTGCATCTTCTAGGTGGCTCCAACTTTGGCTCCCTGGCGGATGA
GTTCCGCAACGGTGGTGGTGGAGGAATCCCTCCAGCAGTTCGCAGTGGAC
AACAGCGCTCATTTCTGTCCCTCAAATGCGGCTACTTGATGGACGAGGAC
TCCAGTCCGGATTCGGAAAGGATGCAGAGTCTGGGCGACGTGGACAGTGG
TCACAGCACGGCGCATTCGCCCAACGACTTTAAGAGCATGTCGCCGCAGA
TCACGTCTCCCGTTTCGCAGTCCCCCTTTCCGCCTCCCTTTGGGGGCGTG
CCCTTTGGCCAGCTGGAGATGCTGGAGGCCACTCACCGTGGTCTGCACAA
GTTTGTGCCGCGGCACCACGACGAGATCGAGCTGGAGATCGGCGACGCCA
TCTACGTGCAAAAGGGA
MXO03084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1200-PB | 1473 | Aplip1-RB | 26..907 | 34..915 | 4410 | 100 | Plus |
| CG1200-PA | 1452 | Aplip1-RA | 26..490 | 34..498 | 2325 | 100 | Plus |
| CG1200-PA | 1452 | Aplip1-RA | 491..886 | 520..915 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aplip1-RB | 2411 | CG1200-RB | 223..1133 | 5..915 | 4495 | 99.6 | Plus |
| Aplip1-RA | 2390 | CG1200-RA | 223..1112 | 5..915 | 4170 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1197509..1197925 | 499..915 | 2085 | 100 | Plus |
| 3L | 28110227 | 3L | 1196937..1197313 | 122..498 | 1885 | 100 | Plus |
| 3L | 28110227 | 3L | 1196539..1196655 | 5..121 | 525 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:00:01 has no hits.
MXO03084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:16 Download gff for
MXO03084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1200-PB | 1..907 | 9..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:36 Download gff for
MXO03084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aplip1-RB | 219..1133 | 1..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:22 Download gff for
MXO03084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aplip1-RB | 219..1133 | 1..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:22 Download gff for
MXO03084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1196535..1196655 | 1..121 | 95 | -> | Plus |
| 3L | 1196937..1197313 | 122..498 | 100 | -> | Plus |
| 3L | 1197509..1197925 | 499..916 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:36 Download gff for
MXO03084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1196535..1196655 | 1..121 | 95 | -> | Plus |
| arm_3L | 1196937..1197313 | 122..498 | 100 | -> | Plus |
| arm_3L | 1197509..1197925 | 499..916 | 99 | | Plus |
