MXO03085.5prime Sequence
763 bp (747 high quality bases) assembled on 2007-05-24
> MXO03085.5prime
CAGTCGACATGGCCACGACAGCGGCCCCTATGACCGCAACGAGTGTAGTT
GTTCTGGATCGCGGAAACAATACAACCTGCACCATCAACTTGCACGGTGC
GACGGTCGTGTCCTGGCGGGTAAACAATCAGGAGCAGTTGTTTGTCAGCA
AACTAGCCTCATTCGATGGCAAGAAGGCGATACGCGGTGGGATTCCCTTT
GTCTTCCCTCAGTTCGGTGCGTGGTCCTTTGGGCCGCAGCATGGATTTGC
GAGGATTACCAGGTGGCACCTGGAGAGACCGCCAGACAGGCTTCACAATG
GCGATGTGGAGGCCATATTTTCGCTGATGGACAACGATTTTACGCGATCC
ATATGGAATTATCAGTTTCGCATCACTTATAGGCTGATCCTGCGCGAAAA
GGAGCTGCACTTCCACATCGGCGTCTACAATCCCAGCAAGGAGCTGAGCT
TCACCTTCAACATGCTGCTGCACACCTACCTAAAGGTGCCCGATGTGCGC
CGATGTCAGATCACCGGCCTCCAGGGCTGTCACTTCATCGACAAGACGCG
GGAGAATGCGCTCTATCAGGAGGGACGCGAGGTGGTCACCGTCAATGAGT
GGACCGACAGGATCTACCAGCACACGCCGCAGGAGCACGTCATCACAAAC
GTGGTGTCCGGCAGGAAGATGAGACTGCACAAGTACAATTTTCCCGATAC
GGTCATCTGGAATCCTTGGATCGATCGATCGCGTGAGATGAGTGACTTCG
GGGACAACGAGTT
MXO03085.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9008-PA | 894 | CG9008-RA | 1..755 | 9..763 | 3675 | 99.4 | Plus |
| CG9008-PB | 576 | CG9008-RB | 1..437 | 327..763 | 2160 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9008-RE | 2194 | CG9008-RE | 434..1188 | 9..763 | 3715 | 99.5 | Plus |
| CG9008-RD | 2125 | CG9008-RD | 434..1188 | 9..763 | 3715 | 99.5 | Plus |
| CG9008-RA | 1987 | CG9008-RA | 434..1188 | 9..763 | 3715 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13775471..13775808 | 702..365 | 1690 | 100 | Minus |
| 2L | 23513712 | 2L | 13775876..13776034 | 366..208 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 13779642..13779732 | 99..9 | 410 | 96.7 | Minus |
| 2L | 23513712 | 2L | 13776098..13776159 | 207..146 | 310 | 100 | Minus |
| 2L | 23513712 | 2L | 13775346..13775407 | 763..702 | 295 | 98.4 | Minus |
| 2L | 23513712 | 2L | 13777771..13777823 | 148..96 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:40 has no hits.
MXO03085.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:21 Download gff for
MXO03085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9008-PA | 1..755 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:34 Download gff for
MXO03085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9008-RA | 426..1188 | 1..763 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:40 Download gff for
MXO03085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9008-RA | 426..1188 | 1..763 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:40 Download gff for
MXO03085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13775346..13775406 | 703..763 | 98 | <- | Minus |
| 2L | 13775471..13775808 | 365..702 | 100 | <- | Minus |
| 2L | 13775878..13776034 | 208..364 | 100 | <- | Minus |
| 2L | 13776098..13776156 | 149..207 | 100 | <- | Minus |
| 2L | 13777771..13777822 | 97..148 | 100 | <- | Minus |
| 2L | 13779645..13779739 | 1..96 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:34 Download gff for
MXO03085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13775878..13776034 | 208..364 | 100 | <- | Minus |
| arm_2L | 13776098..13776156 | 149..207 | 100 | <- | Minus |
| arm_2L | 13777771..13777822 | 97..148 | 100 | <- | Minus |
| arm_2L | 13779645..13779739 | 1..96 | 92 | | Minus |
| arm_2L | 13775346..13775406 | 703..763 | 98 | <- | Minus |
| arm_2L | 13775471..13775808 | 365..702 | 100 | <- | Minus |
