MXO03087.5prime Sequence
716 bp (547 high quality bases) assembled on 2007-05-24
> MXO03087.5prime
CAATCGACATGGCGTTGCGAGTTCTTGGCGTGACGCAGAATATGCGCTCC
TTCATGCGGGGCGTTGACATGATCAAACGATACAAGTCGGCTGCCACCCT
ACAGAAGACTCTGCTGAACATACCCGCCACCCAGGTGACCAAGCTGGACA
ACGGTCTCCGCGTGGCTAGCGAGGATTCCGGTGCCTCTACCGCCACCGTG
GGACTGTGGATCGATGCTGGGTCGCGCTCCAAGAACGAGAAGAACAACGG
AGTGGCCCACTTCCTGGAGCACATGGCCTTCAAGGGTACCGCCAAGCGCT
CGCAAACGGATTTGGAGCTGGAGGTTGAGAACCTGGGCGCCCACTTGAAC
GCCTACACTTCCAGGGAGCATACCGTCTTCTACGCCAAGTGTTTGTCCAA
GGATGTGCCCAAAGCCGTCGAGATCCTGGCCGACATCATCCAAAACTCCA
AGCTGGGTGAGGCTGAGATCGCCCGCGAGCGTTCGGTGATTCTGCGCGAG
ATGCAGGAGGTGGAGAGCAACCTGCAGGAGGTGGTCTTCGATCACCTTCA
CGCCACCGCCTATCAGGGCACTCCTCTGGGCCAGACCATCCTGGGACCCA
CCAAGAACATTCATTCCATTGGCAAGGCCGATCTGACCAACTACATCCAG
ACCCACTACAAGGCTTCGCGAATCGTTCTGGCCGCTGCTGGCGGCGTCAA
GCAAGATGATCTGGTC
MXO03087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-PA | 1413 | CG3731-RA | 1..708 | 9..716 | 3365 | 99 | Plus |
| CG3731-PB | 1413 | CG3731-RB | 1..708 | 9..716 | 3365 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3731-RB | 1560 | CG3731-RB | 56..763 | 9..716 | 3435 | 99 | Plus |
| CG3731-RA | 1632 | CG3731-RA | 128..835 | 9..716 | 3435 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14890960..14891290 | 283..613 | 1625 | 99.4 | Plus |
| 3R | 32079331 | 3R | 14890696..14890903 | 78..285 | 1025 | 99.5 | Plus |
| 3R | 32079331 | 3R | 14891354..14891455 | 615..716 | 465 | 97.1 | Plus |
| 3R | 32079331 | 3R | 14890358..14890426 | 9..77 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:56 has no hits.
MXO03087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:33 Download gff for
MXO03087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-PB | 1..708 | 9..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:29 Download gff for
MXO03087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 275..988 | 1..716 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:20 Download gff for
MXO03087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3731-RA | 122..835 | 1..716 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:20 Download gff for
MXO03087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14890962..14891290 | 285..613 | 99 | -> | Plus |
| 3R | 14891353..14891455 | 614..716 | 96 | | Plus |
| 3R | 14890352..14890426 | 1..77 | 94 | -> | Plus |
| 3R | 14890696..14890902 | 78..284 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:29 Download gff for
MXO03087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10716074..10716148 | 1..77 | 94 | -> | Plus |
| arm_3R | 10716418..10716624 | 78..284 | 99 | -> | Plus |
| arm_3R | 10716684..10717012 | 285..613 | 99 | -> | Plus |
| arm_3R | 10717075..10717177 | 614..716 | 96 | | Plus |
