MXO03088.5prime Sequence
803 bp (756 high quality bases) assembled on 2007-05-24
> MXO03088.5prime
CAGTCGACATGCACAAGGCCATTAAAAACAAATCCAGGCTCCTCTGCGGA
CTCAAGAACTCCAAGGCGGATCTAACGACAGCCAAGTTTATACTATATTA
TGGACCCACGGTGGCAGATAGCGATATCTATGACCTAACCGATTTCCAGA
GTCTTCTGGAGGACGAGCACTTGGATTTGGGCAAGAACACCGTGCTCTAT
TTGCACGGCTACTTGGAAGATCCGGATGTGGAGAGCATTCACGTCATAGC
CGAGGCCTATCTGGAGCGAAAGGATACCAATCTTATCGTCCTAGACTGGG
GTGAACTGGCCGATGGCAATTACATGTTCGATGCCTTCCCGAACCTCAAA
CAGCTGGGCCCAGAGTTGGCCAAGGTCCTGCTCAATATGTTCGACCATGG
CCTGGACATTGAGAAGTTCCACATTGTCGGACACTCGATGGGCGGCCAGC
TGGCCGGACTCCTCGGCCGAGAGATTACTAAACGCACCAAGGGTGTCAGA
AAGATAAAAAGAATTTCCGCTTTGGATCCCGCATTTCCGCTCTTCTATCC
GGGCACGCACCTGTCTGCCAATGATGCGGAGTTCGTCGACGTGATACACA
CGGACGCCTGGCTGTACGGAGCTCCGACGAGCACGGGCACGGCGGATTTC
TGGCCAAATGGTGGATACAGCCTGCAGCCTGGCTGTCCCAAGCGAAACTA
CAAGATGCTCAGCGACAACGATCTGTCCAGTCATCGGAGGAGCTGGTGGT
TCTGGGCCGAGAGCGTTTCGGATCGATATCCCATTGGATTCGATGCTGTG
CCC
MXO03088.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17292-PA | 1023 | CG17292-RA | 1..795 | 9..803 | 3950 | 99.8 | Plus |
| CG17292-PB | 1023 | CG17292-RB | 1..795 | 9..803 | 3950 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17292-RD | 1473 | CG17292-RD | 327..1123 | 7..803 | 3970 | 99.9 | Plus |
| CG17292-RC | 2003 | CG17292-RC | 857..1653 | 7..803 | 3970 | 99.9 | Plus |
| CG17292-RB | 1397 | CG17292-RB | 251..1047 | 7..803 | 3970 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8372880..8373288 | 103..511 | 2030 | 99.8 | Plus |
| 2L | 23513712 | 2L | 8373538..8373831 | 510..803 | 1470 | 100 | Plus |
| 2L | 23513712 | 2L | 8372687..8372753 | 37..103 | 335 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 2792..2845 | 6..59 | 117 | 68.5 | Plus |
MXO03088.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:38 Download gff for
MXO03088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17292-PB | 1..795 | 9..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:49 Download gff for
MXO03088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17292-RA | 103..904 | 1..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:03 Download gff for
MXO03088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17292-RB | 246..1047 | 1..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:03 Download gff for
MXO03088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8373540..8373831 | 512..803 | 100 | | Plus |
| 2L | 8372591..8372625 | 1..36 | 91 | -> | Plus |
| 2L | 8372687..8372753 | 37..103 | 100 | -> | Plus |
| 2L | 8372881..8373288 | 104..511 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:49 Download gff for
MXO03088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8373540..8373831 | 512..803 | 100 | | Plus |
| arm_2L | 8372591..8372625 | 1..36 | 91 | -> | Plus |
| arm_2L | 8372687..8372753 | 37..103 | 100 | -> | Plus |
| arm_2L | 8372881..8373288 | 104..511 | 99 | -> | Plus |
