MXO03089.5prime Sequence
931 bp (856 high quality bases) assembled on 2007-05-24
> MXO03089.5prime
CAGTCGACATGTTCGCCCTGCGCCGCACAGCCGCAATGATGACGTCGGTC
CACCGGCAGCCGCATCTCAGCCAGGCCGTTTTTCGGGCCAATTTCGCCAT
CAGCGCCGCGATGGCCCAGAAGATCAAAGCCGGTCCCGTTGTGGATGTCC
TCGGTGACGAGATGACCCGCATCATTTGGGACTCCATTAAGAGCCAACTG
ATTCTGCCCTTCCTGGACATTGAGCTGCATACCTACGATCTTGGTATTGA
GAACCGCGATAAAACCGAGGACCAGGTCACCATTGACTGTGCTGAGGCCA
TCAAGAAGTACAACGTGGGCATCAAGTGCGCCACAATCACTCCCGACGAG
AAGCGCGTAGAGGAGTTCAACCTGAAGAAGATGTGGAAGTCGCCCAACGG
TACCATCCGTAACATCTTGGGAGGAACCGTCTTCCGTGAGGCAATCATCT
GCAAGAACGTGCCCCGTCTGGTGACTGGCTGGCAGAAGCCTATTGTGATC
GGTCGCCATGCCCACGCCGATCAGTACAAGGCCGTCGACTACGTGGTTCC
CGGACCCGGCAAGCTGACCCTCACCTGGAAGGGAACCGACGGTCAGGTGA
TCGATGAGGTCATTAATGACTTCAAGGGCCCCGGTATTGCCCTGGGAATG
TTCAACACGGACGATTCCATTGTGGACTTTGCCCACGCCTCTTTCAAATA
TGCTCTGGACCGCAAGCTGCCGCTGTACATGAGCACCAAGAACACCATTC
TGAAGAAGTACGATGGACGCTTCAAGGACATATTCGAGGACCTGTACAAC
AAGCAGTACAAGAAGGAGTACGAGGCGGCGGGCATCTGGTATGAACACCG
TCTCATCGACGATATGGTTGCTTATGCCATGAAGTCGGAGGGTGGCTTCG
TGTGGGCCTGCAAGAACTACGACGGTGATGT
MXO03089.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7176-PB | 1353 | Idh-RB | 1..923 | 9..931 | 4615 | 100 | Plus |
| CG7176-PG | 1353 | Idh-RG | 1..923 | 9..931 | 4615 | 100 | Plus |
| CG7176-PC | 1410 | Idh-RC | 159..980 | 110..931 | 4110 | 100 | Plus |
| CG7176-PD | 1314 | Idh-RD | 63..884 | 110..931 | 4110 | 100 | Plus |
| CG7176-PA | 1251 | Idh-RA | 1..821 | 111..931 | 4105 | 100 | Plus |
| CG7176-PF | 1251 | Idh-RF | 1..821 | 111..931 | 4105 | 100 | Plus |
| CG7176-PE | 1251 | Idh-RE | 1..821 | 111..931 | 4105 | 100 | Plus |
| CG7176-PC | 1410 | Idh-RC | 1..102 | 9..110 | 510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idh-RJ | 1899 | CG7176-RJ | 296..1218 | 9..931 | 4615 | 100 | Plus |
| Idh-RI | 1776 | CG7176-RI | 173..1095 | 9..931 | 4615 | 100 | Plus |
| Idh-RG | 1809 | CG7176-RG | 206..1128 | 9..931 | 4615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8357085..8357906 | 931..110 | 4110 | 100 | Minus |
| 3L | 28110227 | 3L | 8358556..8358657 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:42:14 has no hits.
MXO03089.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:43 Download gff for
MXO03089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7176-PG | 1..923 | 9..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:57 Download gff for
MXO03089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1128 | 3..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:12 Download gff for
MXO03089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Idh-RG | 201..1128 | 3..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:12 Download gff for
MXO03089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8357085..8357905 | 111..931 | 100 | <- | Minus |
| 3L | 8358556..8358662 | 3..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:57 Download gff for
MXO03089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8350185..8351005 | 111..931 | 100 | <- | Minus |
| arm_3L | 8351656..8351762 | 3..110 | 97 | | Minus |
