MXO03090.5prime Sequence
886 bp (790 high quality bases) assembled on 2007-05-24
> MXO03090.5prime
CAGTCGACATGTCCGAATCGGGAATCAAAAAGTTGAGCCAGGAGCGGACT
CGCGAATGGTTGGCTAGTCAGGAGGACGAGGAACTGGAGTCCATTGCAGA
GTCCTCGGTTGTGGACAGCTTGGACTACGATTATACCGAGGAAGAGGAGG
ATGCCGACCAAAATACCAGTGAAGAAATCAGCACTATGACACTAGGCACT
CAAATCGCTACCAAAAAGCATTCGATCATCAGCGACACCATAAGGGACCT
TATGAACTCGATCAACAGCATTCAGACTTTGGGCAACGTTAATATAAGCA
ACTCCACGAACGTCCATATCGGCAATGTTACCAATATTAATGGAAATATA
CAAATCATAGCCGATGGCCTTACTCAAAACCGAAGAGATCGGCGGCATGT
TTCACCACCGAGAGATAACGCTCCCAAAACTCCGACACATTTCGAAGACG
ACTATCAGGACGAGTCGGAGGAGAGGGTGCGCTCGGATGTGTTCATCAGG
CGCCAGAAATTCAAAATACCCAAGGAGCTGTCCGCCATCATTCCGCGCTC
TTCGTGGCTAGCACAGAAGCCCATGGACGAGCCACTGCCCTTGCAACTGC
CTGTTAAATATGTGGTTATCTTACACACAGCTACAGAGAGTTCAGAAAAG
CGGGCGATCAACGTAAGACTTATCCGTGACATGCAGTGCTTCCACATTGA
GTCGCGGGGATGGAATGACATTGCGTACAACTTCCTGGTCGGCTGCGATG
GCAACATCTACGAGGGACGCGGATGGAAAACGGTGGGCGCCCACACTCTG
GGTTACAACAGGATCTCGCTGGGGATCAGTTTCATTGGATGCTTCATGAA
AGAACTCCCGACGGCAGACGCCTTTGATATGTGCCG
MXO03090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8995-PA | 1038 | PGRP-LE-RA | 1..878 | 9..886 | 4340 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LE-RB | 2073 | CG8995-RB | 935..1815 | 6..886 | 4375 | 99.8 | Plus |
| PGRP-LE-RA | 1398 | CG8995-RA | 260..1140 | 6..886 | 4375 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15802140..15802440 | 507..207 | 1505 | 100 | Minus |
| X | 23542271 | X | 15802509..15802710 | 207..6 | 1010 | 100 | Minus |
| X | 23542271 | X | 15801411..15801613 | 886..684 | 985 | 99 | Minus |
| X | 23542271 | X | 15801963..15802076 | 621..508 | 570 | 100 | Minus |
| X | 23542271 | X | 15801683..15801747 | 686..622 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:02 has no hits.
MXO03090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:48 Download gff for
MXO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8995-PA | 1..878 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:32 Download gff for
MXO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LE-RA | 258..1140 | 1..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:22 Download gff for
MXO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LE-RA | 258..1140 | 1..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:22 Download gff for
MXO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15802140..15802439 | 208..507 | 100 | <- | Minus |
| X | 15802509..15802712 | 1..207 | 98 | | Minus |
| X | 15801411..15801610 | 687..886 | 99 | <- | Minus |
| X | 15801683..15801747 | 622..686 | 100 | <- | Minus |
| X | 15801963..15802076 | 508..621 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:32 Download gff for
MXO03090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15695444..15695643 | 687..886 | 99 | <- | Minus |
| arm_X | 15695716..15695780 | 622..686 | 100 | <- | Minus |
| arm_X | 15695996..15696109 | 508..621 | 100 | <- | Minus |
| arm_X | 15696173..15696472 | 208..507 | 100 | <- | Minus |
| arm_X | 15696542..15696745 | 1..207 | 98 | | Minus |
