MXO03092.5prime Sequence
771 bp (522 high quality bases) assembled on 2007-05-24
> MXO03092.5prime
CAGTCGACATGTTTTGGATTTTACGGCGCACCGGTGCCGCCAACTTCTTC
AACTCCTTCAACAGCAACTGCAGCTTTTCCAAGAGCAACTCAAACGGCGG
TAATCACAACAACAGCACACAAGACAAATATGTGAAGAGGCCCCCACGGA
AGGCATATGGACGACTGAGTGCCGAGGCCGACGATGCCGTCTCACTTGGC
CACAAAATCGATGATCCGTTCGATGAGCTAGACAACATTGAAATGCTGGC
AGCGAACTCCGCCACTGCCGGCTGTAGCAGTCAGGTACCAGGAGAAGCCA
ATGGCAACGTCAATGTCAACGGGGGCTCGGGTTCAGGCTTAGGATCCACA
GGAGCGGCAGGCTGTGGGAACGGCAGTGGGAACGGTATCGGGAGTGGAAA
CGGGAACCTGTCACTCCTGCCCTGCATGGATGCCGATTGCCAGGGCAACT
ACGAGGTGGAGAGCGCCCTCTGCGAGCTGGGATTGTGCCAGGCGAAAGAC
AAAACATCAAAGGACCTCGGCGCAGGCAGCACGTCAACATCGAAGGAGAT
TAACGAAGACACAATAAGTCGTCTGCATGCGCTGGCCATGGCGGATGACG
ATGATGACTACAACGAATCACTCACCTGCAACGTGTGCGACCGAGCTTTC
CATTGTCACCGCCAGTTGGCATACGCACCAGCAGAAGACGCGACACTTCG
GTTGCAGTGGCTGCAATAGTTTGTTCCCGTCGCTAATGCTGCTGGAGCAC
CACAAGGAGGAATTTGAGCAC
MXO03092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11317-PA | 888 | CG11317-RA | 1..664 | 9..672 | 3120 | 98.7 | Plus |
| CG11317-PA | 888 | CG11317-RA | 665..762 | 674..771 | 440 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11317-RA | 1795 | CG11317-RA | 252..1014 | 8..771 | 3645 | 98.6 | Plus |
| CG11317-RB | 1804 | CG11317-RB | 252..1023 | 8..771 | 3550 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31092056..31092545 | 611..122 | 2360 | 98.8 | Minus |
| 3R | 32079331 | 3R | 31096955..31097070 | 123..8 | 565 | 99.1 | Minus |
| 3R | 32079331 | 3R | 31091686..31091773 | 701..613 | 380 | 97.8 | Minus |
| 3R | 32079331 | 3R | 31091493..31091563 | 771..701 | 340 | 98.6 | Minus |
Blast to na_te.dros performed 2014-11-28 22:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6801 | 35..117 | 136 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6709..6780 | 46..117 | 135 | 65.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2410 | 28..124 | 122 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6904 | 28..121 | 119 | 58.5 | Plus |
MXO03092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:28:58 Download gff for
MXO03092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11317-PA | 1..762 | 9..771 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:10 Download gff for
MXO03092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11317-RA | 245..1014 | 1..771 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:21 Download gff for
MXO03092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11317-RA | 245..1014 | 1..771 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:21 Download gff for
MXO03092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31091493..31091562 | 702..771 | 98 | <- | Minus |
| 3R | 31091686..31091773 | 613..701 | 97 | <- | Minus |
| 3R | 31092055..31092543 | 124..612 | 98 | <- | Minus |
| 3R | 31096955..31097074 | 1..123 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:10 Download gff for
MXO03092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26917215..26917284 | 702..771 | 98 | <- | Minus |
| arm_3R | 26917408..26917495 | 613..701 | 97 | <- | Minus |
| arm_3R | 26917777..26918265 | 124..612 | 98 | <- | Minus |
| arm_3R | 26922677..26922796 | 1..123 | 95 | | Minus |
