MXO03093.5prime Sequence
811 bp (646 high quality bases) assembled on 2007-05-24
> MXO03093.5prime
CAGTCGACATGCGTGGACAACTGTTGCTGAAGGGACCCGCATTGGCGAGG
AGCTTGAGCCGGTGCCGCGTAAGTGCCGTGCCCCAAATTGGATCTGTTCG
TCATGTGACCGCCGGCTGTGCAGCTGGTGATACCGTCAAGGGCGGCAAAG
GAATCGTCTTGGGCCTCTACGAAAAGGAGTCGGGCAAGGGACCTCGATTA
ACGCCTGCTGGCGAAAAGTTTGACGATCGTGTGCAGGGCAAGCTATCGGA
ATTGGTTTGCGAAACCAAATTAACTGGACGATTGGGTCGCGGCAAGGTCT
TCAACAATGTGGACAGCGAGTTCAGATCCATTTGCGTGGTGGGCGTTGGT
CTCGAAGGCATAGCCTTTAATGAACTGGAAATGCTGGACGAGGGTATGGA
GAATGTGCGCATAGCTGCTGGAATCGGTGCCCGATCATTACAAAGTATTG
GCTGCTCGGAAGTGCATGTGGATAATATGGACTATGCCGAACAGGCAGCC
GAAGGTGCTGCACTGGCCATTTGGCGATATGAGGAGAATCTGGCGAAGAA
GTATCGTACCACTATACCGAAACTGGAGCTGCATGGTTCACCGGATGTCG
AGTCCTGGACAAGGGGCCTCTTCAAGGCAGAGGCACAGAATTTGGCCAGA
AGACTGTGTGATGCCCCAACCAATTGTATGACACCGACAATTGTGGCACA
GGCTGCAGTGGATTCACTATGCCCATGCNGCATCACCGTAGAGGTTCGCA
CCATGGAATGGATTGAACAGCAACATCTGAACTCCTTCCTGATGATTGCC
AAAGGCAGTTG
MXO03093.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32063-PB | 1608 | CG32063-RB | 1..803 | 9..811 | 3946 | 99.6 | Plus |
| CG32063-PA | 1608 | CG32063-RA | 1..803 | 9..811 | 3946 | 99.6 | Plus |
| CG13340-PA | 1584 | CG13340-RA | 340..372 | 369..401 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap3-RD | 2640 | CG32063-RD | 178..980 | 9..811 | 3974 | 99.6 | Plus |
| S-Lap3-RC | 2146 | CG32063-RC | 178..980 | 9..811 | 3974 | 99.6 | Plus |
| S-Lap3-RB | 2520 | CG32063-RB | 552..1354 | 9..811 | 3974 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10466512..10467314 | 9..811 | 3974 | 99.6 | Plus |
| 3L | 28110227 | 3L | 10491331..10491940 | 199..808 | 489 | 72 | Plus |
| 2R | 25286936 | 2R | 13779164..13779696 | 808..276 | 359 | 71.1 | Minus |
| 2R | 25286936 | 2R | 13597423..13597666 | 565..808 | 249 | 73.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:00:56 has no hits.
MXO03093.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:03 Download gff for
MXO03093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32063-PA | 1..803 | 9..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:53 Download gff for
MXO03093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap3-RB | 552..1354 | 9..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:50 Download gff for
MXO03093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap3-RB | 552..1354 | 9..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:50 Download gff for
MXO03093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10466512..10467314 | 9..811 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:53 Download gff for
MXO03093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10459612..10460414 | 9..811 | 99 | | Plus |
