MXO03095.5prime Sequence
812 bp (723 high quality bases) assembled on 2007-05-24
> MXO03095.5prime
CAGTCGACATGGATCACGTGAAATTGGTAAACGACCCCATAGATATCGCT
CATATCCATCAGTTGCTGGCCGATGAAGGCTGTGGAGCCTCATCCGTTTT
CGTGGGCACTACGCGCGATAATTTTCAAGGGAAAAAGGTGCTGTCATTGG
CGTACGAGGCCTACGATAGCATGGCACTCAAGGAAATGAATAAAATATGC
TCAGATCTCCGATCTAAGTGGCTCGATCTGAAGCACATAGTCATATATCA
TCGATTGGGAACAGTGCCCGTATGCGAAGCCAGTGTAGTTATAGCCGCCT
CGTCACCACATCGTTCTGAGGCCTTAGAATCAGTATCTTTTGCAATAGAC
CAGCTAAAAACTCGGGTTCCCATCTGGAAAAAGGAAATCTACGACGGCGA
TAACGACAGCGAATGGAAGGAGAACAAGGAGTCCATCAGGCCTAAGAAAT
CGAAAAGTGGCTTCAACTACGCCGCTTGTCCCTGCAAAGTTGAGGAGTCA
CATGACGTCCCGCGAACTCTGGTGCAAATTAGAGTTAATGACGCTGAGTT
AACCAAGCGTTTAGAATGTTTTGTCAACAGAAAACGAGACGAAATAAACT
CACAAAATGTAATTGACTTCAAATCGTCTTTTGTCAGCTCAGACCAAAAC
TTGAGCGATTCCTGCGCTCGAACGCAGAGCACAATTATTAAGCAGGAGCA
GTCAAATTGCCATTTAAAAGTCCGACGAGTAAACAACCGATGCGGACCTC
AGCAAATGGAAATGCGACCCAACTACGAACTCGAACTGAATAAACTAATG
GGATCGCGTGAC
MXO03095.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10238-PA | 1104 | CG10238-RA | 1..804 | 9..812 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42503-RA | 1420 | CG42503-RA | 296..1100 | 8..812 | 4025 | 100 | Plus |
| Mocs2-RA | 1420 | CG10238-RA | 296..1100 | 8..812 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25126567..25126875 | 444..136 | 1545 | 100 | Minus |
| 3R | 32079331 | 3R | 25126167..25126442 | 720..445 | 1380 | 100 | Minus |
| 3R | 32079331 | 3R | 25126932..25127064 | 140..8 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 25126011..25126104 | 812..719 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:42:53 has no hits.
MXO03095.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:13 Download gff for
MXO03095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10238-PA | 1..804 | 9..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:40 Download gff for
MXO03095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42503-RA | 288..1100 | 1..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:52 Download gff for
MXO03095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mocs2-RA | 288..1100 | 1..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:52 Download gff for
MXO03095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25126011..25126102 | 721..812 | 100 | <- | Minus |
| 3R | 25126167..25126442 | 445..720 | 100 | <- | Minus |
| 3R | 25126567..25126873 | 138..444 | 100 | <- | Minus |
| 3R | 25126935..25127067 | 1..137 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:40 Download gff for
MXO03095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20951733..20951824 | 721..812 | 100 | <- | Minus |
| arm_3R | 20951889..20952164 | 445..720 | 100 | <- | Minus |
| arm_3R | 20952289..20952595 | 138..444 | 100 | <- | Minus |
| arm_3R | 20952657..20952789 | 1..137 | 97 | | Minus |
