MXO03096.5prime Sequence
747 bp (747 high quality bases) assembled on 2007-05-24
> MXO03096.5prime
CAGTCGACATGTTCCAAATTGACGACACCTGCCCGGCTCTAATGGACTAC
ATCACGGAGGCAGTGAACGGAAGTTGGGTCTCCAAGCAAAAGATGAGTCT
GCAGAACAACGACAAGCTGCAGATATCAATGCTGGTGCAGTTCAATGAGG
AAATCTTCGAAAAGAGTGAAACCAGGGTGATCATAAACACCCGGCTACTG
ACCACCAAAGACTCTAGCTCGCGAGGCATAACATTCCTTACAGGAGAGGG
CGAGTGCCAGGCATACCTAGCTCCTGCACAGCAAGCCAAACGCTGCAAGG
CCGCCCAAACGATAGTGAGCAATGGACGCCATACTTGCCAGGGTGAACTG
ATCTTTGAGGACAACTTCTCGGAGGCGCAGCTGAACAAGACCACCTGGAA
GCATGACATCCGACAGCGCATGTACCACGTGGAGGAGGAGCTGGTGGCCT
TCGACGATGCCGCACGCAACTGCTTTGTGAAGGAAGGCGAACTCCATATC
GTTCCCACTATCGCCACCGAGGTCACCGATGGCAGCTTCAAACTGGGAGA
TCGCTGTACGGCCGTCGAAAGTCCGGAACAGGAGTGCAACATTGCGCACG
GCATCTTCTATAGCATCAAGCCTCCAGTTTTCTCCGCCCAAATTCACACC
AGAAACTCTTTCAGTTTCAAATTTGGCAAAATCGTCGTGCGCGCCAAGTT
GCCCAAGGGGGATTGGCTTTTCCCCTGTGAGGCAAGCTTTCTAGACC
MXO03096.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4144-PC | 726 | GNBP2-RC | 1..723 | 9..731 | 3615 | 100 | Plus |
| CG4144-PB | 1386 | GNBP2-RB | 152..871 | 7..726 | 3600 | 100 | Plus |
| CG4144-PA | 1299 | GNBP2-RA | 65..784 | 7..726 | 3600 | 100 | Plus |
| CG4144-PD | 1233 | GNBP2-RD | 1..718 | 9..726 | 3590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GNBP2-RD | 1341 | CG4144-RD | 63..782 | 7..726 | 3600 | 100 | Plus |
| GNBP2-RA | 1439 | CG4144-RA | 161..880 | 7..726 | 3600 | 100 | Plus |
| GNBP2-RB | 1501 | CG4144-RB | 223..942 | 7..726 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18674545..18674950 | 412..7 | 2030 | 100 | Minus |
| 3L | 28110227 | 3L | 18674164..18674483 | 731..412 | 1600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:09 has no hits.
MXO03096.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:18 Download gff for
MXO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4144-PC | 1..726 | 9..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:34 Download gff for
MXO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP2-RC | 78..813 | 1..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:26 Download gff for
MXO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP2-RB | 216..942 | 1..726 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:26 Download gff for
MXO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18674160..18674482 | 413..737 | 99 | <- | Minus |
| 3L | 18674545..18674952 | 1..412 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:34 Download gff for
MXO03096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18667260..18667582 | 413..737 | 99 | <- | Minus |
| arm_3L | 18667645..18668052 | 1..412 | 99 | | Minus |
