MXO03104.5prime Sequence
925 bp (747 high quality bases) assembled on 2007-05-24
> MXO03104.5prime
CAGTCGACATGGTAATCGAGGAGTGGAAAAAGAGTGGCATTGCCACCAAG
TTTCCAACATACCGAAATTCGGCCCTAATCACCACACACAGCTGGCAAAA
GGGTAAACGGCAGGACGATGGAGCCGAAGGACTGTGGCGCATCAACGATG
GCATCTATGACTTCACCTCGTTCATTGACAAGCATCCTGGCGGTCCCTTC
TGGATTCGTGAGACCAAGGGCACCGACATCACCGAAGCCTTTGAGGCACA
TCATCTGACCACGGCTCCCGAAAAGATGATCGCCAAATACAAGGTGAGGG
ATGCGGCTGAACCCAGAATCTACACACTGACCTTGGAGGAGGGCGGATTC
TACAAGACGCTAAAGGAGCGAGTCCGCGAGCAACTAAAGACCATAGACAA
GCGGCCGAAAAAGAAGAGTGATCTCATTCACCTGGGTCTCGTTGTGTCGC
TCTACCTGTTGGGCATTGCCAGTGCCAAATACAACAGCCTTTTGGCTTTG
GTCTTGGCGAGTGTGGCCCTCTGCTGGACGGTGATCGTGTCCCACAACTA
CTTTCATCGTCGGGACAACTGGCAGATGTACGCCTTTAATCTGGGCATGA
TGAACTTTGCCGCCTGGCGTGTGTCCCATGCTCTGTCCCACCACATCTAT
CCGAATTCGTATTTCGATCTGGAACTCTCGATGTTCGAACCCTTGCTGTG
CTGGGTGCCCAATCCGCACATCAAGAGCAAGTTGATGCGTTATGTGTCCT
GGGTCACGGAGCCGGTGGCCTATGCCCTCGCCTTCTTCATACAAATGGGC
ACTCGTATTTTCTATTCGCTGCGCCACACCAACATCCTCTACTGGCACGA
CCTACTGCCACTGACTATACCCATTGCCATATACCTGGGAAACCGGGGGA
TCTTTANGCATTTGGATCTGCGTGC
MXO03104.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13279-PA | 1311 | Cyt-b5-r-RA | 1..883 | 9..891 | 4415 | 100 | Plus |
| CG13279-PA | 1311 | Cyt-b5-r-RA | 882..916 | 891..925 | 156 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyt-b5-r-RB | 1557 | CG13279-RB | 90..1005 | 9..925 | 4549 | 99.8 | Plus |
| Cyt-b5-r-RA | 1465 | CG13279-RA | 90..1005 | 9..925 | 4549 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16790219..16790632 | 422..9 | 2070 | 100 | Minus |
| 2L | 23513712 | 2L | 16789517..16789899 | 805..423 | 1915 | 100 | Minus |
| 2L | 23513712 | 2L | 16789326..16789445 | 925..805 | 544 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:38 has no hits.
MXO03104.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:36 Download gff for
MXO03104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13279-PA | 1..916 | 9..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:03 Download gff for
MXO03104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyt-b5-r-RA | 83..1005 | 1..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:56 Download gff for
MXO03104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyt-b5-r-RA | 83..1005 | 1..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:56 Download gff for
MXO03104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16790219..16790639 | 1..422 | 99 | | Minus |
| 2L | 16789326..16789444 | 806..925 | 98 | <- | Minus |
| 2L | 16789517..16789899 | 423..805 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:03 Download gff for
MXO03104.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16789326..16789444 | 806..925 | 98 | <- | Minus |
| arm_2L | 16789517..16789899 | 423..805 | 100 | <- | Minus |
| arm_2L | 16790219..16790639 | 1..422 | 99 | | Minus |
