Clone MXO03107 Report

Search the DGRC for MXO03107

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:31
Well:7
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG31358-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03107.5prime Sequence

901 bp (720 high quality bases) assembled on 2007-05-24

> MXO03107.5prime
CAGTCGACATGAGGGAGCGATATGCAGTCGAAACAGAGAAGCAAGATAAT
GTGGAACCCACCCCGGAAGATGATAACAGCAATTATATCGTTGAAAAAGT
AGCGGTGTTCGTATCATGGATTTTAGTGTTGATTTTACTTCCATTTTCGC
TGTGTTGTTGTCTGACTATAGCCTACGAATTCCATCGACTTGTGATATTT
CGATTGGGTCGTATTAGGAGTTGCTTAGGACCAGGTTTAGTTTTTCTTCT
TCCCTGCATCGATTCGTTTAATACGGTGGACATTCGCACCGATGTGGTTA
ATGTGGATCCGCAGGAGATGCTCACCAAGGATTCGGTGTCGATTACAGTG
AACGCAGTGGTGTTCTACTGCATCTACGATCCCATCAACTCGATCATCAA
GGTGGACGATGCCAGGGATGCCACCGAAAGGATCTCACAGGTCACCCTGC
GAAACATTGTTGGTTCGAAAGGACTCCACGAACTTCTGGCATCCAGGCAG
CAACTTTCCCTGGAAATCCAGCAGGCAGTTGCAAAGATCACAGAACGTTG
GGGCGTGCGAGTGGAACGAGTGGACTTGATGGAGATATCCTTGCCAAGTA
GTCTGGAGCGATCATTGGCCAGCGAAGCGGAGGCGACAAGGGAGGCCAGG
GCCAAGATCATTTTGGCAGAAGGAGAGGCTAAAGCCTCGAAGGCTTTAAA
AGAATGCTCAGATGTTATGTCGGAAAACCAAATTACCCTACAACTAAGGC
ATCTGCAGATTCTCTGTTCCATGGCATCGGAACGTCGGGTTAATGTACTT
TTCCCCATACCCTTGGAAATATGGCACCTTTTATGGATGGAAGGATTCGT
CGGATGCACCACAAGATGATGATGACCGGAGGGATAGCGATGACGATTAC
G

MXO03107.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31358-PA 1425 CG31358-RA 1..812 9..820 4060 100 Plus
CG31358-PA 1425 CG31358-RA 835..895 841..901 280 98.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42505-RA 3446 CG42505-RA 57..951 9..901 4410 99.7 Plus
CG42504-RA 3446 CG42504-RA 57..951 9..901 4410 99.7 Plus
CG31358-RB 1979 CG31358-RB 57..951 9..901 4410 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12031008..12031370 578..216 1815 100 Minus
3R 32079331 3R 12030784..12030953 747..578 835 99.4 Minus
3R 32079331 3R 12031424..12031570 218..72 735 100 Minus
3R 32079331 3R 12030565..12030724 901..744 685 98.1 Minus
3R 32079331 3R 12031634..12031701 76..9 325 98.5 Minus
3R 32079331 3R 12041098..12041363 309..574 265 73.3 Plus
3R 32079331 3R 12041461..12041609 594..742 205 75.8 Plus
Blast to na_te.dros performed on 2014-11-28 22:26:18 has no hits.

MXO03107.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:45 Download gff for MXO03107.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-PA 1..895 9..901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:37 Download gff for MXO03107.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 54..951 3..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:30 Download gff for MXO03107.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31358-RB 54..951 3..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:30 Download gff for MXO03107.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12031425..12031569 73..217 100 <- Minus
3R 12031638..12031704 3..72 95   Minus
3R 12031009..12031368 218..577 100 <- Minus
3R 12030565..12030724 744..901 98 <- Minus
3R 12030788..12030953 578..743 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:37 Download gff for MXO03107.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7857360..7857426 3..72 95   Minus
arm_3R 7856287..7856446 744..901 98 <- Minus
arm_3R 7856510..7856675 578..743 100 <- Minus
arm_3R 7856731..7857090 218..577 100 <- Minus
arm_3R 7857147..7857291 73..217 100 <- Minus