MXO03107.5prime Sequence
901 bp (720 high quality bases) assembled on 2007-05-24
> MXO03107.5prime
CAGTCGACATGAGGGAGCGATATGCAGTCGAAACAGAGAAGCAAGATAAT
GTGGAACCCACCCCGGAAGATGATAACAGCAATTATATCGTTGAAAAAGT
AGCGGTGTTCGTATCATGGATTTTAGTGTTGATTTTACTTCCATTTTCGC
TGTGTTGTTGTCTGACTATAGCCTACGAATTCCATCGACTTGTGATATTT
CGATTGGGTCGTATTAGGAGTTGCTTAGGACCAGGTTTAGTTTTTCTTCT
TCCCTGCATCGATTCGTTTAATACGGTGGACATTCGCACCGATGTGGTTA
ATGTGGATCCGCAGGAGATGCTCACCAAGGATTCGGTGTCGATTACAGTG
AACGCAGTGGTGTTCTACTGCATCTACGATCCCATCAACTCGATCATCAA
GGTGGACGATGCCAGGGATGCCACCGAAAGGATCTCACAGGTCACCCTGC
GAAACATTGTTGGTTCGAAAGGACTCCACGAACTTCTGGCATCCAGGCAG
CAACTTTCCCTGGAAATCCAGCAGGCAGTTGCAAAGATCACAGAACGTTG
GGGCGTGCGAGTGGAACGAGTGGACTTGATGGAGATATCCTTGCCAAGTA
GTCTGGAGCGATCATTGGCCAGCGAAGCGGAGGCGACAAGGGAGGCCAGG
GCCAAGATCATTTTGGCAGAAGGAGAGGCTAAAGCCTCGAAGGCTTTAAA
AGAATGCTCAGATGTTATGTCGGAAAACCAAATTACCCTACAACTAAGGC
ATCTGCAGATTCTCTGTTCCATGGCATCGGAACGTCGGGTTAATGTACTT
TTCCCCATACCCTTGGAAATATGGCACCTTTTATGGATGGAAGGATTCGT
CGGATGCACCACAAGATGATGATGACCGGAGGGATAGCGATGACGATTAC
G
MXO03107.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31358-PA | 1425 | CG31358-RA | 1..812 | 9..820 | 4060 | 100 | Plus |
CG31358-PA | 1425 | CG31358-RA | 835..895 | 841..901 | 280 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42505-RA | 3446 | CG42505-RA | 57..951 | 9..901 | 4410 | 99.7 | Plus |
CG42504-RA | 3446 | CG42504-RA | 57..951 | 9..901 | 4410 | 99.7 | Plus |
CG31358-RB | 1979 | CG31358-RB | 57..951 | 9..901 | 4410 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12031008..12031370 | 578..216 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 12030784..12030953 | 747..578 | 835 | 99.4 | Minus |
3R | 32079331 | 3R | 12031424..12031570 | 218..72 | 735 | 100 | Minus |
3R | 32079331 | 3R | 12030565..12030724 | 901..744 | 685 | 98.1 | Minus |
3R | 32079331 | 3R | 12031634..12031701 | 76..9 | 325 | 98.5 | Minus |
3R | 32079331 | 3R | 12041098..12041363 | 309..574 | 265 | 73.3 | Plus |
3R | 32079331 | 3R | 12041461..12041609 | 594..742 | 205 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:26:18 has no hits.
MXO03107.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:45 Download gff for
MXO03107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-PA | 1..895 | 9..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:37 Download gff for
MXO03107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 54..951 | 3..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:30 Download gff for
MXO03107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31358-RB | 54..951 | 3..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:30 Download gff for
MXO03107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12031425..12031569 | 73..217 | 100 | <- | Minus |
3R | 12031638..12031704 | 3..72 | 95 | | Minus |
3R | 12031009..12031368 | 218..577 | 100 | <- | Minus |
3R | 12030565..12030724 | 744..901 | 98 | <- | Minus |
3R | 12030788..12030953 | 578..743 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:37 Download gff for
MXO03107.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7857360..7857426 | 3..72 | 95 | | Minus |
arm_3R | 7856287..7856446 | 744..901 | 98 | <- | Minus |
arm_3R | 7856510..7856675 | 578..743 | 100 | <- | Minus |
arm_3R | 7856731..7857090 | 218..577 | 100 | <- | Minus |
arm_3R | 7857147..7857291 | 73..217 | 100 | <- | Minus |