MXO03108.5prime Sequence
882 bp (743 high quality bases) assembled on 2007-05-24
> MXO03108.5prime
CAGTCGACATGGAGGCCTACATCCGGCAGAAGAGAGCCTCGCCGGGAATG
GTCCAGGCCAGCGATTTGCAGATCAATCGACCCATGTCCGGGATGCGCAG
CAACAGCCGGGAGCTGCACGCCTACGACGGACCCATGCAGTTCATCAGTT
CGCCCCAAAATCCGGACCAGATACTCACCAACGGCAGTCCCGGCGGCATC
AATCCGGTTGCCATGAACACGAGTCGCAATCACTCGAATAACATGCGCAG
CCTAAGCACCATCAACCAGGAGGCTGATCTCATAGAGGAGATCTCATCGC
ACGAGTTGGAGGACGAGGAGAGCAGTCCGGTGACGGTGATTGAGCAGCAC
CAGCAGTCAGCCTCGCACAGCGCCAACTCGACGCAATCGCAGAAACCACG
TGCCCGCCAGCATTCCTTTAGCGACAATCTGGACGAGGATGACTACACCA
ATCGCAATGTGGCCGGTGCTGCTCCAGTGCGTCCCGCCGGCATGGCCTCA
TCGCCGTACAAGGACGCAACGCTGGACGGCAGCAGCAACGGGACGGGGAA
CGGAACTGGCGGCGAGTCCGAGGGAGATGTCATCGGCAATATCGACCAGT
TCGTGATGCAACCAGCGCCACAGGGAGTGCTCTACAAGTGCCGCATTACG
CGGGACAGGAAGGGCATGGACCGCGGCCTCTTTCCCATCTACTACTTGCA
TCTGGAACGTGACTACGGCAAGAAGATATTTCTGCTGGGAGGTCGCAAAC
GCAAGAAGAGCAAGACATCCAACTACATTGTCAGCTGCGATCCCACGGAT
TTGTCTCGCAATGCCGATGGCTTCTGTGGCAAACTGCGCTCTAATGTCTT
TGGCACATCCTTCACGGTCTTTTGACACGGCA
MXO03108.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9398-PA | 1332 | king-tubby-RA | 1..864 | 9..872 | 4320 | 100 | Plus |
| CG9398-PB | 1383 | king-tubby-RB | 52..915 | 9..872 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ktub-RB | 2496 | CG9398-RB | 700..1573 | 9..882 | 4325 | 99.8 | Plus |
| ktub-RC | 2523 | CG9398-RC | 991..1600 | 273..882 | 3005 | 99.7 | Plus |
| ktub-RC | 2523 | CG9398-RC | 700..964 | 9..273 | 1325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21122000..21122470 | 273..743 | 2355 | 100 | Plus |
| 2R | 25286936 | 2R | 21121639..21121903 | 9..273 | 1325 | 100 | Plus |
| 2R | 25286936 | 2R | 21122524..21122656 | 740..872 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:12 has no hits.
MXO03108.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:51 Download gff for
MXO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9398-PB | 46..924 | 1..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:01 Download gff for
MXO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 694..1572 | 1..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:14 Download gff for
MXO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ktub-RB | 694..1572 | 1..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:14 Download gff for
MXO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21121633..21121903 | 1..273 | 98 | -> | Plus |
| 2R | 21122001..21122468 | 274..741 | 100 | -> | Plus |
| 2R | 21122526..21122665 | 742..881 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:01 Download gff for
MXO03108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17009138..17009408 | 1..273 | 98 | -> | Plus |
| arm_2R | 17009506..17009973 | 274..741 | 100 | -> | Plus |
| arm_2R | 17010031..17010170 | 742..881 | 98 | | Plus |
