MXO03109.5prime Sequence
690 bp (546 high quality bases) assembled on 2007-05-24
> MXO03109.5prime
CAGTCGACATGAACTGTCTATCCGCGATGTTCAAGTACCTGCTGTACTTG
CTCAACCTGGTGTTCGTGGCCGGTGGCATCCTGCTCATTGTGGTGGGCTC
CATCATGCTCTCCACGATGGGCAACTTTACGGCCTTCGACGGAGGCGTTA
ACACCCAGACCATCCCGATCTGCATTATCGTCATCGGAAGTGTCACCTTC
GTAGTGGCCTTCTTCGGATGCTGCGGCACCATTCACGAGAACGCCTGCTG
CACCACCATCTACGCCATCTGCATGCTGATTCTGTTCGGCCTGCAACTGG
CCCTCTCCATCTGGATCTTCGCGGCCAACGACAAGTTCCTGTCCAGCATG
GGCAAGGCAGTGGACAAGGCGTGGGATGAGAACAATGCCGCCCAGGGATA
CCCCATGGATGCCCTCCAGTTGGCCTTCTCTTGCTGTGGCAACACGGGAT
ACCAACAGTATGAAACCGTGCCCAGCTCCTGCTGCGGCTACAAGGATCGC
ACCAAGGTGTGCGAAGCGGAGATCTACAGCCAGCGACCTGGCTGCCGGCA
GGAGTTCGTCGATTTCTGGGCCTCCAATACGGACCTGATTCTATGGAGCA
GTCTGATCATCTCCCTCTTCGAGCTGGGCATCTTCATCATGTCATGCTGC
CTCGCCAGCGCGATGAGGAAGCGCGCAAGCTTTCTAGACC
MXO03109.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18816-PA | 669 | Tsp42Eb-RA | 1..666 | 9..674 | 3205 | 99.2 | Plus |
| CG18816-PB | 669 | Tsp42Eb-RB | 1..666 | 9..674 | 3205 | 99.2 | Plus |
| CG30160-PA | 669 | CG30160-RA | 1..666 | 9..674 | 3205 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30160-RA | 844 | CG30160-RA | 61..727 | 8..674 | 3260 | 99.3 | Plus |
| Tsp42Eb-RB | 865 | CG18816-RB | 82..748 | 8..674 | 3260 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6998929..6999181 | 8..260 | 1250 | 99.6 | Plus |
| 2R | 25286936 | 2R | 7005217..7005469 | 8..260 | 1250 | 99.6 | Plus |
| 2R | 25286936 | 2R | 6999483..6999731 | 426..674 | 1185 | 98.4 | Plus |
| 2R | 25286936 | 2R | 7005771..7006019 | 426..674 | 1185 | 98.4 | Plus |
| 2R | 25286936 | 2R | 7005534..7005698 | 261..425 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 6999246..6999410 | 261..425 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:14 has no hits.
MXO03109.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:56 Download gff for
MXO03109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30160-PA | 1..669 | 9..675 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:04 Download gff for
MXO03109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30160-RA | 55..733 | 1..680 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:16 Download gff for
MXO03109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Eb-RB | 76..754 | 1..680 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:16 Download gff for
MXO03109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6998923..6999181 | 1..260 | 98 | -> | Plus |
| 2R | 6999246..6999410 | 261..425 | 100 | -> | Plus |
| 2R | 6999483..6999737 | 426..680 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:04 Download gff for
MXO03109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2886428..2886686 | 1..260 | 98 | -> | Plus |
| arm_2R | 2886751..2886915 | 261..425 | 100 | -> | Plus |
| arm_2R | 2886988..2887242 | 426..680 | 97 | | Plus |
