MXO03110.5prime Sequence
857 bp (855 high quality bases) assembled on 2007-05-24
> MXO03110.5prime
CAGTCGACATGAAGAAAAAGGTGTTACTGATGGGGAAGAGCGGATCCGGA
AAGACCAGCATGCGCTCCATTATCTTTGCTAACTATATCGCCCGTGATAC
GACACGCCTCGGAGCAACAATCGATGTGGAGCACTCCCATGTGCGGTTTC
TGGGCAACCTGGTGCTTAATCTCTGGGACTGTGGCGGTCAGGAGGGCTTC
ATGAAGCAGTACTTTGCCCAGCAGCGAGACAACATCTTTCGTAATGTGGA
AGTGCTGATTTATGTGTTTGATGTGGAGAGCCAGGAGATAGAGCGCGACA
TCCATTACTACCAGAGCTGCCTGGAGGCACTGCTGCAGAATTCGCCTGAG
GCCAAGATATTCTGTCTGGTGCACAAAATGGACCTGGTGCCGGAAGGCTT
GCGCGAGAGTGTGTTTACTGAGCGCATGGAGGATCTCATAAAATTATCAA
AGCCCGGAAATGTCACCTGTTTCCGTACCAGCATTTGGGATGAAACATTA
TACAAAGCCTGGTCTTCCATTGTCACGATGCTGATACCAAATGTTGCCGC
CCTGGAGAACTCTGTGACACATTTCGGAAATGTAATTGAGGCGGACGAGG
TGCTGTTGTTCGAAAAGGCTACCTTTTTGGTGATCTCCCATTGCCAGAGC
AAGAAGAACCGCGACTCGCACCGCTTTGAAAAGGTGTCCAACATCATCAA
GCAGTTCAAGCTGAGCTGTTCGAAGTTGGGCGCTAAGTTCCAATCGATGG
AGGTGCGCAATAGCGCATTTGCCGCTTTCATTGACACCTTCACCAGCAAC
ACCTACGTGATGGTGGTCATGTCGGATCCCACGCTGCCCTCGGAGGCTAC
CCTAGTC
MXO03110.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11968-PA | 936 | CG11968-RA | 1..849 | 9..857 | 4220 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RagA-B-RA | 1408 | CG11968-RA | 92..940 | 9..857 | 4230 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8983613..8983997 | 505..121 | 1925 | 100 | Minus |
| 3R | 32079331 | 3R | 8983200..8983551 | 857..506 | 1745 | 99.7 | Minus |
| 3R | 32079331 | 3R | 8984055..8984156 | 120..19 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:27 has no hits.
MXO03110.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:30:01 Download gff for
MXO03110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11968-PA | 1..849 | 9..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:43 Download gff for
MXO03110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RagA-B-RA | 74..932 | 1..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:36 Download gff for
MXO03110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RagA-B-RA | 82..940 | 1..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:36 Download gff for
MXO03110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8983200..8983551 | 506..857 | 99 | <- | Minus |
| 3R | 8983613..8983997 | 121..505 | 100 | <- | Minus |
| 3R | 8984055..8984154 | 21..120 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:43 Download gff for
MXO03110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4808922..4809273 | 506..857 | 99 | <- | Minus |
| arm_3R | 4809335..4809719 | 121..505 | 100 | <- | Minus |
| arm_3R | 4809777..4809876 | 21..120 | 100 | <- | Minus |
