MXO03114.5prime Sequence
851 bp (833 high quality bases) assembled on 2007-05-24
> MXO03114.5prime
CAGTCGACATGAAGATTTTGTGCGAAGTTCAGGTGGTGAATCGCGCCACC
CAGACGAACAAAACGCCACGTCCCGTGAAATCCACACTGGCCATTGGCTA
CAAGCAAAGCGCCAGGGATGCGAATGGAAACACCAAGAAGGAGCTGGAAA
TGGTGCTCTTTAGTGGACAAAACAAGACTGGAAATCGCTACAAGGTCAAG
GATAACATTCATGTCGTGCACACCAAGTTTGTGCTGGATGGGAAGACCAC
CATTGGTTTCATACAGCCGCCAGATAACCTGCTTATTAAGTGCGATCCTA
TCCAGCTGAAAGGATTCCTGCAGACCCTCAAGCTGGGCATGGATGGCAAG
GACGCCATCAATTTGAGACTGAACATAAACGCCGCTACGGCAATTCCGCA
GAAGGCACAGCCCCAGGTGCGCATGGTAATCAGCAAGCGGAGCGAGTATC
CCATCAAGGGATTTCCGCGCACCCTCAAATCGCTGACCATCAACAACAGC
CAGCTAGTGAAGCTGAGCTTCGAGATATGCACCCTGCGCAACCTCACAAA
GCTGGATGTCAGCGGTAACAAGCTGACCAAGATTCCCTCGGAGCTGGGTC
GTCTTCCGCTCACCTCGCTGCACCTGGGCAACAACTTACTGGGTACTCAG
AATGACTGGTGCTGGCTGCGGGGCACTAAGCTCTGTCAGTCGCTCGGCGA
GCTGGATCTGTCGGGCAACGGGCTGACTTACTTTCCACCTCCGCTGGTTA
AATTCGAGTCGCTTGTATCGCTGAATCTCAACAACAATCTGCTGAGTCGG
CTGCCCTTTGCCATTCGCCGGATGAAAGCACTGCGTAAACTTTATGTGTG
C
MXO03114.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6098-PA | 1287 | Lrr47-RA | 1..843 | 9..851 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lrr47-RB | 1874 | CG6098-RB | 87..934 | 4..851 | 4225 | 99.9 | Plus |
| Lrr47-RA | 1589 | CG6098-RA | 87..934 | 4..851 | 4225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10517421..10517998 | 4..581 | 2875 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10518058..10518329 | 580..851 | 1360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:35:07 has no hits.
MXO03114.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:30:19 Download gff for
MXO03114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6098-PA | 1..843 | 9..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:20 Download gff for
MXO03114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lrr47-RA | 85..934 | 1..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:37 Download gff for
MXO03114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lrr47-RA | 85..934 | 1..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:37 Download gff for
MXO03114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10517419..10517998 | 1..581 | 99 | -> | Plus |
| 2L | 10518060..10518329 | 582..851 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:20 Download gff for
MXO03114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10517419..10517998 | 1..581 | 99 | -> | Plus |
| arm_2L | 10518060..10518329 | 582..851 | 100 | | Plus |
