MXO03115.5prime Sequence
837 bp (777 high quality bases) assembled on 2007-05-24
> MXO03115.5prime
CAGTCGACATGCTGTGTACCTTGGCACGGAGTTTTGGAACGGCGCTGGCG
AGGAGGAGCTCTTGGTCGACTGCCCGGCGAAGGCGACTGCTGGCCACAAG
TCCCCCCCCTTTGGCGAGCCAGCAGATGCCCAGGAGCTATACGCTAGACA
ACGGACCCAAGGTGAAGTCCGATCATCGCTCTGGAACGATGGTGGAGGTG
GCTCGTGTCATTCGCGAGCAATCCGGCGTGGACGTGGGATACCATACGAT
TCCCAAGCCCCGAGATCATCTCCTGCAGCACGAGCCGAAGAGGGAGGAGC
TTCCACCAAGAACTATGCTGGATTCGCACACCACGGCCATTCTGCCCCTG
AGCTCCAGTGAGCTAATCCGCGAGAGCTACGTGAATCACCTGGGAAGGGT
GAGATTGGGCCGAATTATGGAGGAGTTGGACATGTTTGCCGTATGGATCT
GCCATCGTCATGTGAAGCTGCCCAAGCTGCCGAAGGGAGTGCCTTTGCCT
TACACCTTTGTCACGTTGCTGGTCGACAAAGTGGAGTTCACCAACCTGGA
GCGGTTGCAGGTCAACCAGGACATCGAGATCAGTGGTCACATCTCGTGGG
CGGGGCGGAGCTCCATGGAGATTACCATCTATGTGAGGCAGTTGGCCCAC
GGCGAATATATTGATGTAACAAAAGCAATCTTCGTCATGGTGGCCAGAAA
TGCCACCAATACGGGACCGGCTCCCATTAATCCTATAGAGGTTGGCGATG
AAACCGAGAAGCTCATTTGGGAGCAGGCAGAGAAGCGGCAAAAAGTGCGC
AAGTCTTCTGCCATGGACTCAGTGTTTCACTCGCCGC
MXO03115.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:30:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1774-PA | 1419 | CG1774-RA | 1..829 | 9..837 | 4095 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1774-RB | 1731 | CG1774-RB | 189..1017 | 9..837 | 4115 | 99.8 | Plus |
CG1774-RA | 1860 | CG1774-RA | 318..1146 | 9..837 | 4115 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31593366..31594005 | 198..837 | 3170 | 99.7 | Plus |
3R | 32079331 | 3R | 31593120..31593309 | 9..198 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:43:04 has no hits.
MXO03115.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:30:24 Download gff for
MXO03115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1774-PA | 1..829 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:44 Download gff for
MXO03115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1774-RA | 377..1205 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:58 Download gff for
MXO03115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1774-RA | 318..1146 | 9..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:58 Download gff for
MXO03115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31593120..31593309 | 9..198 | 100 | -> | Plus |
3R | 31593367..31594005 | 199..837 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:44 Download gff for
MXO03115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27418842..27419031 | 9..198 | 100 | -> | Plus |
arm_3R | 27419089..27419727 | 199..837 | 99 | | Plus |