MXO03116.5prime Sequence
462 bp (355 high quality bases) assembled on 2007-05-24
> MXO03116.5prime
CAGTCGACATGAGATGGCGGCACGCAGTTCGCGCTACATTTACTTCGACC
ACGGCCACCGAATCTAGTCCGCTCATAGGAAAAGTTATAAGTAATTCGAG
AGCCCCACAAATTGCGCATGAAATGTTGGTGGAATACTTTATGGCGCTGC
TCGTGATCATGGGATTAACCGCTCCAGTCGACAAGCAGAGCCGGCGCAGC
AGCCAATACTTCGGCCATCTGGCCGCCGCCGAGGAATTGTCCAACTTGAT
ACCAGATAATTACGATGCCATCGATCCCGTGTTTGACAACACAACAGATC
GGGAGGTTATTGCAGCTTTGGGCACCACCGCCCGTCTCCACTGCCGCGTT
CGCCACCTGGGCGACAGGGCGGTGTCCTGNATACGACAACGGGATCTCCA
CATCCTGACCATCGGCATCATGACCTACACGAACGATCAGCGCTTTCTGG
CGCGGCACATCG
MXO03116.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:30:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5308-PA | 1011 | dpr5-RA | 1..454 | 9..462 | 2251 | 99.7 | Plus |
| CG5308-PB | 897 | dpr5-RB | 1..340 | 123..462 | 1681 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr5-RA | 1817 | CG5308-RA | 369..823 | 8..462 | 2264 | 99.8 | Plus |
| dpr5-RB | 1419 | CG5308-RB | 46..425 | 83..462 | 1889 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11503411..11503660 | 213..462 | 1239 | 99.6 | Plus |
| 3R | 32079331 | 3R | 11501115..11501246 | 83..214 | 660 | 100 | Plus |
| 3R | 32079331 | 3R | 11500352..11500428 | 8..84 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:54 has no hits.
MXO03116.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:30:30 Download gff for
MXO03116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5308-PA | 1..454 | 9..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:41 Download gff for
MXO03116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr5-RA | 362..823 | 1..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:47 Download gff for
MXO03116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr5-RA | 362..823 | 1..462 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:47 Download gff for
MXO03116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11500345..11500428 | 1..84 | 95 | -> | Plus |
| 3R | 11501117..11501245 | 85..213 | 100 | -> | Plus |
| 3R | 11503412..11503660 | 214..462 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:41 Download gff for
MXO03116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7326067..7326150 | 1..84 | 95 | -> | Plus |
| arm_3R | 7326839..7326967 | 85..213 | 100 | -> | Plus |
| arm_3R | 7329134..7329382 | 214..462 | 99 | | Plus |
