MXO03117.5prime Sequence
904 bp (834 high quality bases) assembled on 2007-05-24
> MXO03117.5prime
CAGTCGACATGGAGAAGCTGCTGCAATCGACGCTGTTTGTCATCCTGATA
ATGGCCACAAAATGCGGCAGTGGCTCGACCCAGAACCAGCATCACGAGAG
CAGTTCCCAGCTGGATCCCGATCCGGAGTTCATAGGGTTCATCAACAACG
TCACATATCCGGCAGGACGCGAGGCCATCCTGGCCTGCTCGGTGCGCAAT
CTCGGCAAGAATAAGGTTGGTTGGCTGAGAGCCTCCGATCAGACCGTTTT
AGCTCTCCAAGGTCGCGTTGTCACCCATAATGCGAGAATCAGCGTCATGC
ATCAGGATATGCACACATGGAAACTAAAAATCAGCAAACTGCGGGAAAGT
GACCGCGGCTGCTATATGTGCCAAATAAATACGAGTCCCATGAAGAAACA
AGTGGGTTGTATCGATGTGCAGGTACCACCGGATATCATCAACGAAGAGT
CATCCGCCGATCTGGCCGTCCAGGAGGGCGAGGATGCCACGCTCACCTGC
AAAGCCACGGGAAATCCCCAGCCAAGGGTCACTTGGCGCAGGGAGGACGG
CGAAATGATACTCATTCGCAAGCCAGGCAGTAGGGAGCTCATGAAAGTGG
AGTCCTATAATGGATCCTCGCTCAGGCTGCTCCGCCTGGAGAGGCGTCAG
ATGGGCGCCTACTTGTGTATAGCATCCAACGATGTTCCACCTGCCGTCAG
CAAACGAGTCTCGCTGAGTGTGCAATTTGCTCCCATGGTGAGGGCCCCCA
GCCAGCTCCTGGGCACGCCCTTGGGATCCGATGTGCAGCTGGAATGCCAG
GTGGAGGCCTCGCCGTCGCCCGTCTCCTACTGGCTGAAGGGGGCGCGGAC
GTCCAACGGATTCGCCAGCGTCTCCACGGCCAGCCTGGAATCCGGCTCCG
CGGG
MXO03117.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14521-PA | 1242 | CG14521-RA | 1..890 | 9..898 | 4425 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14521-RA | 3105 | CG14521-RA | 1381..2270 | 9..898 | 4435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28926898..28927072 | 597..423 | 875 | 100 | Minus |
3R | 32079331 | 3R | 28926194..28926365 | 898..727 | 845 | 99.4 | Minus |
3R | 32079331 | 3R | 28926717..28926847 | 726..596 | 655 | 100 | Minus |
3R | 32079331 | 3R | 28927475..28927596 | 217..96 | 610 | 100 | Minus |
3R | 32079331 | 3R | 28927135..28927241 | 423..317 | 535 | 100 | Minus |
3R | 32079331 | 3R | 28927310..28927412 | 316..214 | 515 | 100 | Minus |
3R | 32079331 | 3R | 28927684..28927771 | 96..9 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:24 has no hits.
MXO03117.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:30:35 Download gff for
MXO03117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-PA | 1..895 | 9..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:28 Download gff for
MXO03117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-RA | 1374..2275 | 1..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:34 Download gff for
MXO03117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14521-RA | 1374..2275 | 1..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:34 Download gff for
MXO03117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28926188..28926365 | 727..904 | 98 | <- | Minus |
3R | 28926717..28926845 | 598..726 | 100 | <- | Minus |
3R | 28926898..28927071 | 424..597 | 100 | <- | Minus |
3R | 28927135..28927241 | 317..423 | 100 | <- | Minus |
3R | 28927310..28927410 | 216..316 | 100 | <- | Minus |
3R | 28927477..28927595 | 97..215 | 100 | <- | Minus |
3R | 28927684..28927778 | 1..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:28 Download gff for
MXO03117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24751910..24752087 | 727..904 | 98 | <- | Minus |
arm_3R | 24752439..24752567 | 598..726 | 100 | <- | Minus |
arm_3R | 24752620..24752793 | 424..597 | 100 | <- | Minus |
arm_3R | 24752857..24752963 | 317..423 | 100 | <- | Minus |
arm_3R | 24753032..24753132 | 216..316 | 100 | <- | Minus |
arm_3R | 24753199..24753317 | 97..215 | 100 | <- | Minus |
arm_3R | 24753406..24753500 | 1..96 | 95 | | Minus |