Clone MXO03117 Report

Search the DGRC for MXO03117

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:31
Well:17
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG14521-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03117.5prime Sequence

904 bp (834 high quality bases) assembled on 2007-05-24

> MXO03117.5prime
CAGTCGACATGGAGAAGCTGCTGCAATCGACGCTGTTTGTCATCCTGATA
ATGGCCACAAAATGCGGCAGTGGCTCGACCCAGAACCAGCATCACGAGAG
CAGTTCCCAGCTGGATCCCGATCCGGAGTTCATAGGGTTCATCAACAACG
TCACATATCCGGCAGGACGCGAGGCCATCCTGGCCTGCTCGGTGCGCAAT
CTCGGCAAGAATAAGGTTGGTTGGCTGAGAGCCTCCGATCAGACCGTTTT
AGCTCTCCAAGGTCGCGTTGTCACCCATAATGCGAGAATCAGCGTCATGC
ATCAGGATATGCACACATGGAAACTAAAAATCAGCAAACTGCGGGAAAGT
GACCGCGGCTGCTATATGTGCCAAATAAATACGAGTCCCATGAAGAAACA
AGTGGGTTGTATCGATGTGCAGGTACCACCGGATATCATCAACGAAGAGT
CATCCGCCGATCTGGCCGTCCAGGAGGGCGAGGATGCCACGCTCACCTGC
AAAGCCACGGGAAATCCCCAGCCAAGGGTCACTTGGCGCAGGGAGGACGG
CGAAATGATACTCATTCGCAAGCCAGGCAGTAGGGAGCTCATGAAAGTGG
AGTCCTATAATGGATCCTCGCTCAGGCTGCTCCGCCTGGAGAGGCGTCAG
ATGGGCGCCTACTTGTGTATAGCATCCAACGATGTTCCACCTGCCGTCAG
CAAACGAGTCTCGCTGAGTGTGCAATTTGCTCCCATGGTGAGGGCCCCCA
GCCAGCTCCTGGGCACGCCCTTGGGATCCGATGTGCAGCTGGAATGCCAG
GTGGAGGCCTCGCCGTCGCCCGTCTCCTACTGGCTGAAGGGGGCGCGGAC
GTCCAACGGATTCGCCAGCGTCTCCACGGCCAGCCTGGAATCCGGCTCCG
CGGG

MXO03117.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14521-PA 1242 CG14521-RA 1..890 9..898 4425 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14521-RA 3105 CG14521-RA 1381..2270 9..898 4435 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28926898..28927072 597..423 875 100 Minus
3R 32079331 3R 28926194..28926365 898..727 845 99.4 Minus
3R 32079331 3R 28926717..28926847 726..596 655 100 Minus
3R 32079331 3R 28927475..28927596 217..96 610 100 Minus
3R 32079331 3R 28927135..28927241 423..317 535 100 Minus
3R 32079331 3R 28927310..28927412 316..214 515 100 Minus
3R 32079331 3R 28927684..28927771 96..9 440 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:56:24 has no hits.

MXO03117.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:30:35 Download gff for MXO03117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14521-PA 1..895 9..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:28 Download gff for MXO03117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14521-RA 1374..2275 1..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:34 Download gff for MXO03117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14521-RA 1374..2275 1..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:34 Download gff for MXO03117.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28926188..28926365 727..904 98 <- Minus
3R 28926717..28926845 598..726 100 <- Minus
3R 28926898..28927071 424..597 100 <- Minus
3R 28927135..28927241 317..423 100 <- Minus
3R 28927310..28927410 216..316 100 <- Minus
3R 28927477..28927595 97..215 100 <- Minus
3R 28927684..28927778 1..96 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:28 Download gff for MXO03117.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24751910..24752087 727..904 98 <- Minus
arm_3R 24752439..24752567 598..726 100 <- Minus
arm_3R 24752620..24752793 424..597 100 <- Minus
arm_3R 24752857..24752963 317..423 100 <- Minus
arm_3R 24753032..24753132 216..316 100 <- Minus
arm_3R 24753199..24753317 97..215 100 <- Minus
arm_3R 24753406..24753500 1..96 95   Minus