MXO03120.5prime Sequence
912 bp (844 high quality bases) assembled on 2007-05-24
> MXO03120.5prime
CAGTCGACATGCTGCTCTCAATGCAAATGTGGCGCTCTCTGTGGCTGGCG
GCCCTATTCTGCGGATTAGCCCAGGCCAAAGGTTCCCACAAGGTGCACTG
TTCGGAGGATCAGATGAGGGTTGACATCGGACTGCCGGATGCGGAGTCAA
AGGATCAGAGTGCTCCTCAGATCTATTTGGAGGGATTGAAGGGATATCCG
GATGAACGATGCCAGCCGCAAATCGATGGATCCCTGGCCGTTTTTCGGCT
TTCACTCAGCGATTTTTACGAGTGCGGAGTAACTCGAATGGTCAACCAGC
TAACGGGCAAGAAGGTGTATTACCATAAAATCATCATCGAGTCAACCAGC
GGCAAGGAGATCGTCAGCGTTAAGTGCATCACCACCGCCAGTCCCGCCTA
TAATGTGATGATGAATGCCACCACCGGGTCCAGTTCCACGTCCACTTCCA
GCGGCGGCATCCACGGCCTGGTCAAGCGGGATGTGCTGCCGGCGGGATTC
CAGGAACCCGAGGATCTGGAGATCACCACATCGCTGACCAAGCGGGCCCC
GGAGCCACGACTCTCAATTGGCGTTAGCCAGGATGGTCAGAAGTTCACCA
GGGATTTGACTGTCAAGTCGGGCACACCTTTGACAATGGAAATCAATCTG
GATGAGGACTCTGCACCTGTTTATGGTCTGGGTGTCAACTATTTGGATGT
GACGGATACGCATACGTCATCGGAAACGTTGATCTTCAAGGGCTGCACAG
TGGATCCCTATCTCTTCGAGAACTTCAACACCATTGATGGCGACATTTTG
AGTGCCAAGTTCAAGGCCTTCAAGTTCCCCGACTCGTCGTACGTGCAATT
CCGTGCCACGGTCAACGTGTGTTTGGGACAGTGCCTCGGCACCCAGTGCT
CCACAACCAGGT
MXO03120.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13432-PA | 1245 | l(2)05510-RA | 1..868 | 9..876 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qsm-RB | 1956 | CG13432-RB | 261..1165 | 9..912 | 4455 | 99.7 | Plus |
| qsm-RA | 1817 | CG13432-RA | 122..1026 | 9..912 | 4455 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20565277..20565503 | 306..80 | 1135 | 100 | Minus |
| 2R | 25286936 | 2R | 20565000..20565207 | 512..305 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 20563908..20564069 | 903..742 | 765 | 98.1 | Minus |
| 2R | 25286936 | 2R | 20564130..20564252 | 742..620 | 615 | 100 | Minus |
| 2R | 25286936 | 2R | 20564322..20564431 | 621..512 | 550 | 100 | Minus |
| 2R | 25286936 | 2R | 20581559..20581633 | 83..9 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:02 has no hits.
MXO03120.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:30:52 Download gff for
MXO03120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13432-PA | 1..905 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:33 Download gff for
MXO03120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qsm-RA | 122..1026 | 9..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:10 Download gff for
MXO03120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qsm-RA | 122..1026 | 9..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:10 Download gff for
MXO03120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20565001..20565206 | 306..511 | 100 | <- | Minus |
| 2R | 20565278..20565501 | 82..305 | 100 | <- | Minus |
| 2R | 20581561..20581633 | 9..81 | 100 | | Minus |
| 2R | 20563898..20564068 | 743..912 | 98 | <- | Minus |
| 2R | 20564130..20564251 | 621..742 | 100 | <- | Minus |
| 2R | 20564323..20564431 | 512..620 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:33 Download gff for
MXO03120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16451403..16451573 | 743..912 | 98 | <- | Minus |
| arm_2R | 16451635..16451756 | 621..742 | 100 | <- | Minus |
| arm_2R | 16451828..16451936 | 512..620 | 100 | <- | Minus |
| arm_2R | 16452506..16452711 | 306..511 | 100 | <- | Minus |
| arm_2R | 16452783..16453006 | 82..305 | 100 | <- | Minus |
| arm_2R | 16469066..16469138 | 9..81 | 100 | | Minus |
