MXO03122.5prime Sequence
803 bp (668 high quality bases) assembled on 2007-05-24
> MXO03122.5prime
CAGTCGACATGGCAATCATACTGCAAGAAGCCCAGAAGTGGTATCGGGAC
CTAATGGACAATAAAAGCGATCCTCGCGTTAACGACTTCTTTCTGCTATC
CTCGCCACTGCCCACACTTTGTATGTGCATATTCTATGCCTACTTCAGCA
AATCCCTGGGGCCCAGGCTGATGGCCAAACGGAAACCGATGGAGTTGCGA
TCTGTTTTAGTTGTATACAACGCGATACAAACAATATTTAGCGCGTGGAT
CTTTTATGAGTACTTAATGAGCGGATGGTGGGGCCACTACAGCTTAAAGT
GTCAGCCCGTTGACTATAGCACCACTGGCTTGGCCATGCGGATGGTCAAC
ATTTGCTGGTGGTACTACATATCTAAGTTCACCGAGTTCTTCGACACACT
CTTCTTCATTCTGCGAAAAAAGAACGAGCACGTCTCCACACTACACGTCA
TCCATCACGGCTGCATGCCGTTCTCCGTCTGGATGGGTCTGAAGTTTGCG
CCAGGCGGTCATAGCACTTTCTTTGCCCTTCTCAACTCGTTTGTGCACAT
TGTAATGTATTTCTACTACATGATCGCCGCCATGGGTCCAAAGTACCAGA
AGTACATCTGGTGGAAGAAGTACCTGACCACCTTCCAAATGGTTCAATTC
GTGGCCATTTTCACCCACCAGTTCCAGCTTTTGTTCCGCGAATGTGATTA
CCCCAAGGGCTTCATGGTCTGGATCGGATTGCACGGCGTTATGTTCCTGT
TCCTGTTCTCCGACTTTTACAAAGCGAAATATCTCAACGCAGCTCGACGT
CGC
MXO03122.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31523-PC | 1065 | CG31523-RC | 1..795 | 9..803 | 3975 | 100 | Plus |
| CG31523-PB | 1065 | CG31523-RB | 1..795 | 9..803 | 3975 | 100 | Plus |
| CG31523-PA | 1065 | CG31523-RA | 1..795 | 9..803 | 3975 | 100 | Plus |
| CG31523-PD | 1065 | CG31523-RD | 1..795 | 9..803 | 3975 | 100 | Plus |
| CG31522-PA | 1095 | CG31522-RA | 552..620 | 563..631 | 195 | 91.3 | Plus |
| CG31522-PD | 1098 | CG31522-RD | 555..623 | 563..631 | 195 | 91.3 | Plus |
| CG31522-PB | 1098 | CG31522-RB | 555..623 | 563..631 | 195 | 91.3 | Plus |
| CG31522-PA | 1095 | CG31522-RA | 425..458 | 436..469 | 145 | 97 | Plus |
| CG31522-PD | 1098 | CG31522-RD | 428..461 | 436..469 | 145 | 97 | Plus |
| CG31522-PB | 1098 | CG31522-RB | 428..461 | 436..469 | 145 | 97 | Plus |
| CG2781-PA | 990 | CG2781-RA | 343..386 | 354..397 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31523-RF | 2585 | CG31523-RF | 251..1045 | 9..803 | 3975 | 100 | Plus |
| CG31523-RE | 3232 | CG31523-RE | 898..1692 | 9..803 | 3975 | 100 | Plus |
| CG31523-RG | 2576 | CG31523-RG | 242..1036 | 9..803 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4468214..4468405 | 260..69 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 4467843..4468007 | 505..341 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 4467411..4467573 | 803..641 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 4467630..4467771 | 643..502 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 4468066..4468148 | 341..259 | 415 | 100 | Minus |
| 3R | 32079331 | 3R | 7982860..7983134 | 628..354 | 415 | 76.7 | Minus |
| 3R | 32079331 | 3R | 4444122..4444251 | 631..502 | 335 | 83.8 | Minus |
| 3R | 32079331 | 3R | 4468464..4468524 | 69..9 | 305 | 100 | Minus |
| 3R | 32079331 | 3R | 22555672..22555780 | 529..637 | 290 | 84.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:17 has no hits.
MXO03122.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:31:05 Download gff for
MXO03122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31523-PB | 1..795 | 9..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:06 Download gff for
MXO03122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31523-RD | 103..904 | 1..803 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:18 Download gff for
MXO03122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31523-RG | 235..1036 | 1..803 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:18 Download gff for
MXO03122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4467411..4467572 | 642..803 | 100 | <- | Minus |
| 3R | 4467632..4467768 | 505..641 | 100 | <- | Minus |
| 3R | 4467844..4468006 | 342..504 | 100 | <- | Minus |
| 3R | 4468066..4468146 | 261..341 | 100 | <- | Minus |
| 3R | 4468214..4468404 | 70..260 | 100 | <- | Minus |
| 3R | 4468464..4468531 | 1..69 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:06 Download gff for
MXO03122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 293133..293294 | 642..803 | 100 | <- | Minus |
| arm_3R | 293354..293490 | 505..641 | 100 | <- | Minus |
| arm_3R | 293566..293728 | 342..504 | 100 | <- | Minus |
| arm_3R | 293788..293868 | 261..341 | 100 | <- | Minus |
| arm_3R | 293936..294126 | 70..260 | 100 | <- | Minus |
| arm_3R | 294186..294253 | 1..69 | 94 | | Minus |
