MXO03128.5prime Sequence
875 bp (764 high quality bases) assembled on 2007-05-24
> MXO03128.5prime
CAGTCGACATGACTGCCAACGGGAACGGAACTGCTCAGGATTTGGGTGCC
GGCATTGAAATCGTGGCCCCACAGAAGCTCCAGCCGGAATCCAAGGTTTA
CGGGCGCGTGCAGCAATTGACCGCATTTTTCAAACAACAATTCGGAGCGA
ATCCGGACTTTATCGTTCGAGTGCCAGGAAGGGTCAACATCATTGGCGAG
CATGTGGACTACTGCGGCTATTCGGTGCTGCCCATGGCTGTAAGCCAGAG
CATTTTCCTTGCAGTGGCCAAGAATCCTAGTGATAGCCAGCTTCAACTCA
GAAATCTCGAGGAAGCGAAGTTTACGGGCTACGATGCCGATCTCAAAACG
CTCAGAATCGAGCTTCCAAAGAGTGGTGGACCCGCTTGGTATAACTACTT
CTTGTGCGGCATCAAAGGAATACAGGAGAGTCTGGGCAGCCAGTGGAAGC
CCATTGGCATGCGCATTGCTGTGGACGGTAATGTGCCCTTGGCGGCAGGA
CTCTCCAGTTCGAGTGCCATGGTCAGCTCCGCTGTGTTGGCCACCGCACA
CGTCCAGGGCAAGAAACTAGATCGCAGGGAGCTGGCTTCCATTTCGGCCA
TGTGTGAGCAGTACATTGGAACGCACAGTGGTGGTATGGATCAGGCAATA
GCCTATTTGGGCAGAGTTGGCTGCGCCCACCACATCGAGTTCCATCCCAA
GCTCAAGGGCACTCCGGTGACCTTGCCAGCGGGCAAGTGCTTCGTTGTGG
CCAACAGTCTGGCTCAAAAGAACAAGGCTGCTTCGTCGGACTACAATGAA
CGAGTGGTGGAATGCCGATTGGCCACTAGATGGCTGGCCAAGCGCAAGGG
CTTGATCAACTGGGAGGATATTGTG
MXO03128.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5288-PA | 1473 | CG5288-RA | 1..867 | 9..875 | 4335 | 100 | Plus |
| CG5288-PB | 1473 | CG5288-RB | 1..867 | 9..875 | 4335 | 100 | Plus |
| CG5288-PC | 1473 | CG5288-RC | 1..867 | 9..875 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Galk-RD | 2035 | CG5288-RD | 428..1296 | 7..875 | 4345 | 100 | Plus |
| Galk-RB | 2053 | CG5288-RB | 446..1314 | 7..875 | 4345 | 100 | Plus |
| Galk-RA | 2669 | CG5288-RA | 120..988 | 7..875 | 4345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8984148..8984669 | 875..354 | 2610 | 100 | Minus |
| 3L | 28110227 | 3L | 8984813..8984988 | 355..180 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 8985052..8985227 | 182..7 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:24 has no hits.
MXO03128.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:31:32 Download gff for
MXO03128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5288-PC | 1..867 | 9..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:50 Download gff for
MXO03128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galk-RA | 114..988 | 1..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:32 Download gff for
MXO03128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galk-RA | 114..988 | 1..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:32 Download gff for
MXO03128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8984148..8984667 | 356..875 | 100 | <- | Minus |
| 3L | 8984813..8984986 | 182..355 | 100 | <- | Minus |
| 3L | 8985053..8985234 | 1..181 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:50 Download gff for
MXO03128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8977248..8977767 | 356..875 | 100 | <- | Minus |
| arm_3L | 8977913..8978086 | 182..355 | 100 | <- | Minus |
| arm_3L | 8978153..8978334 | 1..181 | 98 | | Minus |
