MXO03129.5prime Sequence
862 bp (820 high quality bases) assembled on 2007-05-24
> MXO03129.5prime
CAGTCGACATGCGTTTCAATTTCTCCACCCACTCGGCGGCCCCCACCTCT
ACGACCATACCAACAACAACACAGGCAAATGGAGGCGAACAGGCCACCCA
ACCGCTCAAGAAGGCCATCGAAGCGGATCCCGATTCGCTGGACAGTGTGA
TCAGCAATCCTCAATCCTATCCCATCACAATTGTGCCGAATAGGCCGACC
AGCTACTATGGCCTATCCCAAAATGGCAAGCCGTTCCCCCGCCAACCGAG
CTGCAGATCTCGCAATTTCCGGCCTGGCAGCATGAGACGTGTTCGCCGAC
GAGCGGTCTTCAAAAATGGTGACTGCAATGTGGTGCAGAAGCACCTGCAA
AGACGCCGAGTTCGTTTCCTGCAGGACATGTACACCACCATGGTGGATTG
GCAGTGGCGGTGGACTCTCTTGGCCTTCGCACTCAGCTTTATCCTGTCTT
GGCTCTTCTTTGCTCTCATCTGGTGGCTGATTATCTACACACACGGAGAC
TTGGAAGAGCCTCACTTGCCAGAAAACCAAGAGGAATCTGGTTGGGCGCC
TTGTGTTTCGGCCATCGATGGCTTTACTTCCTGCTTCCTGTTCTCCATTG
AAACGCAGCACACTATTGGCTACGGTGTCCGAACCACCTCGCCCGAGTGT
CCAGAGGCCATCTTCATGATGTGCTTCCAGTCCATCTATGGCGTGATGTC
TTCAGCATTTATGGCCGGAATAGTGTTTGCCAAGATGACAAGGGCCAAAC
AGCGGGCACAGACTTTGTTGTTCTCCAAACACGCCGTAATTTGCCAACGT
GATGGCACCCTTTCGCTGATGTTCGGTGTGGGTGACATGCGAAAATCACA
CATCATTGGAGC
MXO03129.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4370-PA | 1362 | Irk2-RA | 1..854 | 9..862 | 4245 | 99.8 | Plus |
| CG4370-PB | 1314 | Irk2-RB | 200..806 | 256..862 | 3010 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irk2-RD | 2248 | CG4370-RD | 296..1149 | 9..862 | 4255 | 99.9 | Plus |
| Irk2-RA | 1894 | CG4370-RA | 296..1149 | 9..862 | 4255 | 99.9 | Plus |
| Irk2-RC | 1485 | CG4370-RC | 249..855 | 256..862 | 3020 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23514829..23515161 | 862..530 | 1650 | 99.7 | Minus |
| 3R | 32079331 | 3R | 23515213..23515490 | 531..254 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 23518458..23518705 | 256..9 | 1240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:36 has no hits.
MXO03129.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:31:38 Download gff for
MXO03129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4370-PA | 1..854 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:58 Download gff for
MXO03129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RA | 296..1149 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:37 Download gff for
MXO03129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irk2-RA | 296..1149 | 9..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:37 Download gff for
MXO03129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23514829..23515159 | 532..862 | 99 | <- | Minus |
| 3R | 23515213..23515487 | 257..531 | 100 | <- | Minus |
| 3R | 23518458..23518710 | 1..256 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:58 Download gff for
MXO03129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19340551..19340881 | 532..862 | 99 | <- | Minus |
| arm_3R | 19340935..19341209 | 257..531 | 100 | <- | Minus |
| arm_3R | 19344180..19344432 | 1..256 | 98 | | Minus |
