MXO03130.5prime Sequence
840 bp (828 high quality bases) assembled on 2007-05-24
> MXO03130.5prime
CAGTCGACATGAGGCGTCGCAAAGTGCTCATCTGCTGGGCTGCTCTGCAG
GCGGGCAGCTCCATCCTCACCTGCCTGCTCCTCCTACTGACCACCGGCCA
GAATCCGCAGCAGGTGGCAGCCGGAATAGTGCCGCCTCCGTGGAGTGATC
CCGCACAGAATCCGTGCGCCAGCATGTCCGGTGGCTGGCAGCTGCTGTAC
TGGGCACCTCTGAAGAAGTGCTTCAAGATCTTCACCCTCGGCTATCCATG
TCCGGCCACCATGGAGCTCAGTCCCACCGCAGTGAGTGCCAAGCGTAAGG
ATGCACCTGCAGCCGAGTGCCGCTGCCCTCCGGGAACTGCACTCAGTCCG
CTTCACGATAATGTGTGCTACAAGCTATACGAACGGGGACCCTGCCAACC
CGAGGAGTACTTCCAACCCGTGCCGGATCAGGTCAAGAGAACCGCAACCG
GCAACCGTTGGGGTACGTGCAAGCGACCGCTGCATTGCCCGGAGGACATG
CTCTTCTGGCCGAGGGACAACAAGTGCTATGCGAGGCATGCAAAGGGTCC
ATGCAGCCGGGGTAAACTCCTCGTTCGCAACGAGGAGGGACTGGCCGAGT
GCCGTTGCGAGGATGTGGGCGACTTGGCCTCGTTCTACTATCCGGCAGAG
GAGTCTTGCTATGAGCACTACACCAAAGGACCCTGCTCGACGCCGGGTCA
CATCTTCTTGCCCGGCGGTCGATGCGACTGCCAGCGGCACTTGCCGCACT
ATCATGCTCCGCATCAAATGTGCTATGAGCTGGACACTCCTGGCCCCTGT
CCACCTGGTCACATCTTTCGCATACCCGACGAGGTCCAGG
MXO03130.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:31:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16959-PA | 1512 | CG16959-RA | 1..832 | 9..840 | 4160 | 100 | Plus |
| CG16959-PB | 1512 | CG16959-RB | 1..832 | 9..840 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16959-RE | 1866 | CG16959-RE | 268..1100 | 8..840 | 4165 | 100 | Plus |
| CG16959-RD | 1843 | CG16959-RD | 245..1077 | 8..840 | 4165 | 100 | Plus |
| CG16959-RC | 2043 | CG16959-RC | 445..1277 | 8..840 | 4165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15122624..15123055 | 439..8 | 2160 | 100 | Minus |
| 3L | 28110227 | 3L | 15121064..15121409 | 783..438 | 1730 | 100 | Minus |
| 3L | 28110227 | 3L | 15120893..15120950 | 840..783 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:33:40 has no hits.
MXO03130.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:31:46 Download gff for
MXO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16959-PB | 1..832 | 9..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:14 Download gff for
MXO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16959-RB | 238..1077 | 1..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:44 Download gff for
MXO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16959-RC | 438..1277 | 1..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:44 Download gff for
MXO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15120893..15120949 | 784..840 | 100 | <- | Minus |
| 3L | 15121064..15121407 | 440..783 | 100 | <- | Minus |
| 3L | 15122624..15123058 | 1..439 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:14 Download gff for
MXO03130.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15113993..15114049 | 784..840 | 100 | <- | Minus |
| arm_3L | 15114164..15114507 | 440..783 | 100 | <- | Minus |
| arm_3L | 15115724..15116158 | 1..439 | 99 | | Minus |
