MXO03132.5prime Sequence
865 bp (861 high quality bases) assembled on 2007-05-24
> MXO03132.5prime
CAGTCGACATGCAGGTTGATGGTTGTACCAGCAGCTCATCCGAGATCCCC
CATCCCGCGAAGCGTGAAACGTGGATCAGTGGGAAAATGCAGTCGTCATC
GCATTCCAAAGATGGTCATAATGCAGCGGGGGCTTCAAAACTGCTTCAGG
ATCACCAGGAGCCCGAGGACTACTTGGAGCACCTAATGAAGGAGGGCAGT
CAGGAGGGCGACAGCGGTGCTGATTTGGAGCTACCTTCGTGGTACGATGA
GCAGCTATTCAGGCGTGGTCAGAGCTACTTTAGCACGTATCGCTTTGTAA
TGAACGCCGGAATGCTGGCTGGTCTTATTGCCGTGCTGGCTATTCCATCC
ATTCTCCGGGTGCTGTCGTGCACACGCCAATCCTCGACAGCGTTCACCGC
CTACCGTCGCTATGTGCGTACTATATTCCACACGCAAGCCTGGTATAACC
ACAACATCGCGGACCGTGGCAGCAGGTTCTGGACCAGCATTGCGGCCGTG
AGGCGGGCCCACAGCCGCTCCAGTCATGCGTGCGCCCGCCAAGGAGCTGG
ACAGATCACCCAGAAGGATTTGGCGCTCACGCAGTTCGGTTTCATTGGCT
TCATAACGATGGGCGCACATCGCATAAAGCTGAAAGATCAGGACTTCCTG
GAGGCCACTACGCATATGTGGCGCGTTCTCGGCTATCTGCTGGGCATCAA
GGATGAGTACAACATCTGCGGTAGGAACTGGGCGGAGTCAAAGCTCCGCC
TGGACATTGTGATGCGTAAGGTATACGAACCAGCTCTGGCAACACTGGGG
AGGATTTCAACGAATGACCGAGGCCCTGATTAATGGCTTGTGGCACATAA
ACACCATGCTGTCGG
MXO03132.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31344-PA | 1212 | CG31344-RA | 1..784 | 9..792 | 3920 | 100 | Plus |
| CG31344-PA | 1212 | CG31344-RA | 803..859 | 809..865 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31344-RA | 1450 | CG31344-RA | 180..1042 | 5..865 | 4265 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15223786..15224388 | 865..265 | 2915 | 99.7 | Minus |
| 3R | 32079331 | 3R | 15224742..15224934 | 265..73 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 15225082..15225150 | 73..5 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:20 has no hits.
MXO03132.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:31:52 Download gff for
MXO03132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31344-PA | 1..859 | 9..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:09 Download gff for
MXO03132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31344-RA | 176..1042 | 1..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:20 Download gff for
MXO03132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31344-RA | 176..1042 | 1..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:20 Download gff for
MXO03132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15224742..15224934 | 73..265 | 100 | <- | Minus |
| 3R | 15225083..15225151 | 1..72 | 95 | | Minus |
| 3R | 15223786..15224387 | 266..865 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:09 Download gff for
MXO03132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11050464..11050656 | 73..265 | 100 | <- | Minus |
| arm_3R | 11050805..11050873 | 1..72 | 95 | | Minus |
| arm_3R | 11049508..11050109 | 266..865 | 99 | <- | Minus |
