MXO03134.5prime Sequence
879 bp (803 high quality bases) assembled on 2007-05-24
> MXO03134.5prime
CAGTCGACATGAAGTGCCAACTGCTTTTCGTGGCCACCGTGTGCCTGGCC
AGCGTTTGGGCGCTTCCCGTGCCCGACGAGGAGGTGGCCATCCAGCCGGA
CAGCGGTGCCAAGGCCGAGCTCCTGACCAAGACCGTGCTGCCCACCGCCG
TTGAGCCTGCTCCCTTGAAGCCCGAGGCCGAGAAGCCGGCAGAGACCAAG
ACCATCGAAGCCAAGGCCGCCGTTCCAGAGCAGCCCGACGTCAACGCCAA
CCCATCACCCAGCACTCCTGCCGCCGAGCCAGCCAAGGAGATCAACAGCG
TGGAGCTCAAGTCGAGCGCGCCGGACGTAGAGACCGCTCCGGCCATTCCT
GAGAAGAAGACCCTGCCCGAGGAGGCCAAGCCCGCCCAGGAGAACGCTCC
CGTTGAGGCCGAGAAGAAGCAGGAGAAGACCGCCCGCACGGAGGCGGAAC
CCACTGTCGAGGCTCAGCCCCAGGCCACCAAGGCCATTGAACAGGCCCCC
GAAGCCCCAGCCGCCAATGCCGAGGTGCAGAAGCAAGTTGTCGACGAGGT
CAAGCCCCAGGAGCCCAAGATCGATGCCAAGTCCGCCGAGGAGCCAGCGA
TTCCCGCCGTAGTGGCCGCCGAGAAAGAGACACCCGTGCCCGAGCAGCCC
GCCCGCCAGGAGAGGATCAACGAAATCGAACAGAAGGATGCCAAGAAGGA
CGCTGCTGTTGCCGAGGAGCCAGCCAAGGCCGCTGAAGCCACACCCACCG
CCGCTCCTGAAGCCGCCACCAAGTCGGACTCCAACATCCAGGTGATTGCT
CCCGAGAAGAAGTCCATCGAGTCGTCCCCTGCTGCTGCGGCTGCTTCTCC
TGCCGCCCAGGCTGCCCAGGCCAAGTCCG
MXO03134.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7088-PB | 1329 | bnb-RB | 1..871 | 9..879 | 4355 | 100 | Plus |
| CG7088-PC | 1329 | bnb-RC | 1..871 | 9..879 | 4355 | 100 | Plus |
| CG7088-PA | 1329 | bnb-RA | 1..871 | 9..879 | 4355 | 100 | Plus |
| CG7088-PD | 1329 | bnb-RD | 1..871 | 9..879 | 4355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bnb-RD | 1853 | CG7088-RD | 80..950 | 9..879 | 4355 | 100 | Plus |
| bnb-RA | 2095 | CG7088-RA | 322..1192 | 9..879 | 4355 | 100 | Plus |
| bnb-RC | 1947 | CG7088-RC | 174..1044 | 9..879 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18795423..18796293 | 879..9 | 4355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:45 has no hits.
MXO03134.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:05 Download gff for
MXO03134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7088-PD | 1..871 | 9..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:03 Download gff for
MXO03134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnb-RC | 167..1044 | 1..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:41 Download gff for
MXO03134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bnb-RC | 167..1044 | 1..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:41 Download gff for
MXO03134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18795423..18796297 | 1..879 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:03 Download gff for
MXO03134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18689456..18690330 | 1..879 | 99 | | Minus |
