MXO03137.5prime Sequence
829 bp (744 high quality bases) assembled on 2007-05-24
> MXO03137.5prime
CAGTCGACATGCCCCAATCCATCGCCAGGATCGCCAATGTCGGTAAGGAG
CACCGAACGGTGTCCAGTCACCCGAATTACCTTCAGTTCGAGGAGCCCAA
GTTCGACCTAAAGGATGTTACCGTTGAAGAGCTGGCCGCCGCTGCTAACG
TAACAGTGGACACTATCAAGCACGCCATTTACGTCCGGGAGCAGCAGCTA
AAGGCCGAACACCGGGCCCAACTGGCGGCCAAGCTAAGGGAAGAGTTTAT
GCGCACCTCCACTGTGAGGACTACGACCACGACGACCACAACGACAACCA
CTACACCGCGCCCACAAAAGTCGCTGGCGGAGCACAAGGTGTCCAAGGTA
ATGAATGCCCCTAAAGAGTACTATCCAGTGGGCTACGATAAGAACTTTGA
CGACAACTTCAAATCCAAGGTGGACCTGCCACCTACAAGCTTCTCCTGCG
CTAAGCAAAAGCACTTCCCCGGTCTCTACGCTGACACCGACCTTGGCTGC
ATGGTATTCCACGTATGCGCCCTAACCGATGACGGCATGGTGCGGAAGTC
GTTCCTTTGCCCGGAGAACACACTCTTCGACCAGACGATCTTAAAGTGCA
ACTGGTGGTTCTACGTCGACTGCAGCTCTAGCACGAGCGTCTACGACTCC
AACATTCCCATCTCAAAGAGCTATCAGCTGATGAAGTCGCTCACCTATTT
CTCCAAGTACGCTGGCGGTCAGAGGCACGAGCAGGGTGGAGACAAAGACG
AGAATGCGCTGGACATCGATTCGCTGAGAGAGTCGATGGAGGGCGTGGCC
CGGCGCCAGGAGCAAGCCAAGAAGGCGGA
MXO03137.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7549-PC | 1692 | CG7549-RC | 784..1604 | 9..829 | 4105 | 100 | Plus |
| CG7549-PA | 1563 | CG7549-RA | 655..1475 | 9..829 | 4105 | 100 | Plus |
| CG7549-PB | 909 | CG7549-RB | 1..821 | 9..829 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtg-RF | 2276 | CG7549-RF | 837..1657 | 9..829 | 4105 | 100 | Plus |
| mtg-RE | 2399 | CG7549-RE | 960..1780 | 9..829 | 4105 | 100 | Plus |
| mtg-RH | 2233 | CG7549-RH | 794..1614 | 9..829 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8259119..8259459 | 9..349 | 1705 | 100 | Plus |
| 3R | 32079331 | 3R | 8259773..8260099 | 503..829 | 1635 | 100 | Plus |
| 3R | 32079331 | 3R | 8259545..8259705 | 346..506 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:22 has no hits.
MXO03137.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:18 Download gff for
MXO03137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7549-PB | 1..820 | 9..828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:12 Download gff for
MXO03137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtg-RE | 953..1778 | 1..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:21 Download gff for
MXO03137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtg-RH | 788..1613 | 1..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:21 Download gff for
MXO03137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8259113..8259457 | 1..347 | 98 | -> | Plus |
| 3R | 8259547..8259702 | 348..503 | 100 | -> | Plus |
| 3R | 8259774..8260098 | 504..828 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:12 Download gff for
MXO03137.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4085496..4085820 | 504..828 | 100 | | Plus |
| arm_3R | 4084835..4085179 | 1..347 | 98 | -> | Plus |
| arm_3R | 4085269..4085424 | 348..503 | 100 | -> | Plus |
