MXO03138.5prime Sequence
795 bp (671 high quality bases) assembled on 2007-05-24
> MXO03138.5prime
CAGTCGACATGCCTACCATAACCGAGGATTGCATAGATGGATTCCAACAG
TACTACTCGCGGCCACCGGAGAGGCCCAAGAAGAAGTCCCTGAAGCAGAT
GGTCTACGACTCGGAGGACAACTCCTACTTCGGACGCTCGATGGACAGCT
GGGCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCCTAGCCGCC
CTCGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGATCCTCGCAT
TCCCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCCAGGTCTAG
GTTTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTTTGATCTGG
TACAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGACTCCCTGGA
TGATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGGCCGTGGTC
AGAACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGGGTCAGGTG
TGCGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAGAATAACTA
CAGCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAACAAGATCT
ACGGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGCCCGCGAAC
ATGCCCGCCAGCTTGAAGACCTACATCGCACAGGTCGAGAAGACGCAGCC
AGAAAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAACCCAGCCG
ACCACGAGAACATTGGTGCTGTCAACTACCTGCACATCACGAGAT
MXO03138.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9261-PC | 972 | nrv2-RC | 1..775 | 9..783 | 3825 | 99.7 | Plus |
| CG9261-PF | 972 | nrv2-RF | 1..775 | 9..783 | 3825 | 99.7 | Plus |
| CG9261-PD | 969 | nrv2-RD | 139..772 | 150..783 | 3120 | 99.6 | Plus |
| CG9261-PA | 969 | nrv2-RA | 139..772 | 150..783 | 3120 | 99.6 | Plus |
| CG9261-PE | 969 | nrv2-RE | 139..772 | 150..783 | 3120 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv2-RG | 2635 | CG9261-RG | 795..1569 | 9..783 | 3845 | 99.7 | Plus |
| nrv2-RF | 2143 | CG9261-RF | 303..1077 | 9..783 | 3845 | 99.7 | Plus |
| nrv2-RC | 2668 | CG9261-RC | 828..1602 | 9..783 | 3845 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6791031..6791328 | 707..410 | 1460 | 99.3 | Minus |
| 2L | 23513712 | 2L | 6796337..6796481 | 153..9 | 725 | 100 | Minus |
| 2L | 23513712 | 2L | 6791699..6791842 | 296..153 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 6791518..6791640 | 414..292 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 6790892..6790969 | 783..706 | 375 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-28 21:43:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 4633..4686 | 255..202 | 117 | 68.5 | Minus |
MXO03138.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:25 Download gff for
MXO03138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9261-PF | 1..787 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:53 Download gff for
MXO03138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv2-RC | 823..1614 | 3..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:04 Download gff for
MXO03138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv2-RC | 823..1614 | 3..795 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:04 Download gff for
MXO03138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6790880..6790967 | 708..795 | 94 | <- | Minus |
| 2L | 6791031..6791323 | 415..707 | 99 | <- | Minus |
| 2L | 6791518..6791637 | 295..414 | 100 | <- | Minus |
| 2L | 6791701..6791841 | 154..294 | 100 | <- | Minus |
| 2L | 6796337..6796486 | 3..153 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:53 Download gff for
MXO03138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6790880..6790967 | 708..795 | 94 | <- | Minus |
| arm_2L | 6791031..6791323 | 415..707 | 99 | <- | Minus |
| arm_2L | 6791518..6791637 | 295..414 | 100 | <- | Minus |
| arm_2L | 6791701..6791841 | 154..294 | 100 | <- | Minus |
| arm_2L | 6796337..6796486 | 3..153 | 98 | | Minus |
