MXO03139.5prime Sequence
876 bp (716 high quality bases) assembled on 2007-05-24
> MXO03139.5prime
CAGTCGACATGGAGCTCTCCTCCGCCTCATCCGCCCATCTCAATGGCAAG
GAGCTACCGGCCGTGCCACAGAACTCGGTGCAGACGCATCCCAGATACAA
ATGCTACTCCTGCGAGCCGCCCTGTCGGGATCCCTATGAGTTTACCCACA
CCTGCCAGAATGCGATTCAGTGCTGGAAGTCGCGCACACGCGATGCCGAT
GGTCAGGTGCAGGAGTCACGCGGCTGCAGCACCTCGCCGGATCAACTGCC
CATGATCTGCAGCCAGAACTCCTTGAAGATCAACGGGCCCAGTAAACGCA
ATACGGGGAAGTTCGTGAATGTGGTCTGCTGTGCCGGTGATTACTGCAAT
GAGGGAGACTTTCCGGAACTGCTGCCCTTCGACAGCAATGATGTGACGGT
GATAACCGCGGATACCAGTAGCATAAGCAAGATGCTCGTCGCCGTTCTGG
GTCCTTTTCTGGTCATCGCTCTGCTGGGCGCCGTGACCATCTTCTTCATT
CGTCGTAGCCATCGCAAGCGTCTGGCTGCCTCGCGAACCAAACAGGACCC
GGAAGCGTATCTGGTCAATGATGAGCTGCTCCGCGCCACCAGCGCCGGGG
ACAGTACGCTGAGGGAGTATCTGCAGCACTCGGTGACCTCCGGCTCGGGC
AGCGGATTGCCGCTGCTAGTGCAGCGTACGCTAGCCAAACAGGTCACCCT
GATCGAGTGCATTGGACGAGGCAAATACGGCGAGGTTTGGCGCGGTCACT
GGCATGGCGAAAGCATCGCCGTGAAGATATTCTTCAGTCGCGACGAGGAG
TCCTGTAAGCGGGAGACAGAGATATATAGCACCATATTGCTACGACATGA
AAATATTCTGGGATTCATCGCCTCTG
MXO03139.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1891-PA | 1713 | sax-RA | 103..973 | 6..876 | 4305 | 99.7 | Plus |
| CG1891-PB | 1608 | sax-RB | 1..868 | 9..876 | 4290 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sax-RB | 2716 | CG1891-RB | 458..1328 | 6..876 | 4325 | 99.8 | Plus |
| sax-RA | 2415 | CG1891-RA | 157..1027 | 6..876 | 4325 | 99.8 | Plus |
| sax-RC | 2451 | CG1891-RC | 280..1063 | 93..876 | 3890 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7807705..7808366 | 168..829 | 3295 | 99.8 | Plus |
| 2R | 25286936 | 2R | 7807113..7807201 | 6..94 | 445 | 100 | Plus |
| 2R | 25286936 | 2R | 7807566..7807644 | 92..170 | 395 | 100 | Plus |
| 2R | 25286936 | 2R | 7808508..7808556 | 828..876 | 230 | 98 | Plus |
Blast to na_te.dros performed 2014-11-28 19:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| opus | 7521 | opus OPUS 7521bp | 3516..3616 | 40..146 | 115 | 62 | Plus |
MXO03139.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:32:32 Download gff for
MXO03139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1891-PA | 99..973 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:35 Download gff for
MXO03139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RA | 153..1027 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:40 Download gff for
MXO03139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RA | 153..1027 | 1..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:40 Download gff for
MXO03139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7807109..7807201 | 1..94 | 96 | -> | Plus |
| 2R | 7807569..7807644 | 95..170 | 100 | -> | Plus |
| 2R | 7807708..7808366 | 171..829 | 99 | -> | Plus |
| 2R | 7808510..7808556 | 830..876 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:35 Download gff for
MXO03139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3694614..3694706 | 1..94 | 96 | -> | Plus |
| arm_2R | 3695074..3695149 | 95..170 | 100 | -> | Plus |
| arm_2R | 3695213..3695871 | 171..829 | 99 | -> | Plus |
| arm_2R | 3696015..3696061 | 830..876 | 97 | | Plus |
